View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_28 (Length: 390)
Name: NF10179_low_28
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 4e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 257 - 368
Target Start/End: Original strand, 7643821 - 7643932
Alignment:
| Q |
257 |
tttgagggaccaacaaattagttgtaaagctaaagaaaatcacacaaatactcacttttccaaacagttcacacaacacaatggattacaatgtgtatct |
356 |
Q |
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| T |
7643821 |
tttgagggaccaacaaattagttgtaaagctaaagaaaatcacacaaatactcacttttgcaaacagttcacacaacacaatggattacaatgtgtatct |
7643920 |
T |
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| Q |
357 |
tttgagttttct |
368 |
Q |
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| T |
7643921 |
tttgagttttct |
7643932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 7643584 - 7643642
Alignment:
| Q |
20 |
gaaaccacatgagctcataaaactagatccgacgacaaagtttgtttacatatttatgc |
78 |
Q |
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| T |
7643584 |
gaaaccacatgagctcataaaactagatccgacgacaaagtttgtttacatatttatgc |
7643642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 7643705 - 7643745
Alignment:
| Q |
141 |
ataacatgacatatttagtatggcttaataagcgttatctc |
181 |
Q |
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| T |
7643705 |
ataacatgacatatttagtatggcttaataagtgttatctc |
7643745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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