View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_low_29 (Length: 377)
Name: NF10179_low_29
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_29 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 52325296 - 52325044
Alignment:
| Q |
18 |
cagtccctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgagc |
117 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
52325296 |
cagttcctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatcgccatatgttccttcagatttcatatgggc |
52325197 |
T |
|
| Q |
118 |
aatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52325196 |
aatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccat |
52325097 |
T |
|
| Q |
218 |
aaataagtgagtacatacatttacacacatgctactaactataattcattgct |
270 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52325096 |
aaataagtgagtatatacatttacacacatgctactaactataattcattgct |
52325044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 22 - 229
Target Start/End: Complemental strand, 52329722 - 52329515
Alignment:
| Q |
22 |
ccctggtggaaaaaattgatccttaaaagcttctctaaattcttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgagcaatg |
121 |
Q |
| |
|
||||||||||||||||||| |||| || |||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
52329722 |
ccctggtggaaaaaattgaaccttgaaggcttctctaagttcttgaatggctttttcttctgcatcgccatatgttccttcaaatttcatatgggcaatg |
52329623 |
T |
|
| Q |
122 |
caattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
52329622 |
caattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacatcgaataaacttctcaaagggacctaaacacacccataaat |
52329523 |
T |
|
| Q |
222 |
aagtgagt |
229 |
Q |
| |
|
|| ||||| |
|
|
| T |
52329522 |
aaatgagt |
52329515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 185
Target Start/End: Complemental strand, 52332889 - 52332795
Alignment:
| Q |
91 |
atatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaa |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
52332889 |
atatgttccttcagatttcatatgggcaatgcaattttctgacacctttctcacatattcactaccgtctagtgttctcacctttgtacttcgaa |
52332795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 322 - 369
Target Start/End: Complemental strand, 52324903 - 52324856
Alignment:
| Q |
322 |
atgattaggggcatatgatcattatggagtagtatgttgctacctttg |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52324903 |
atgattaggggcatatgatcattatggagtagtatgttgctacctttg |
52324856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 92 - 206
Target Start/End: Complemental strand, 52322108 - 52321994
Alignment:
| Q |
92 |
tatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttctagtgttctcacctttgtacttcgaataaatt |
191 |
Q |
| |
|
|||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||||||| ||| || | ||| | | |||| | |||||| |||| |
|
|
| T |
52322108 |
tatgttccatcagatttcatataagcaatacaattttctgacaccttcctcacatattcacgaccgtccaaagtttttaactttccccctcgaatcaatt |
52322009 |
T |
|
| Q |
192 |
tctcaaagggaccta |
206 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
52322008 |
tctcaaagggaccta |
52321994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 60 - 234
Target Start/End: Complemental strand, 9179381 - 9179216
Alignment:
| Q |
60 |
attcttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgagcaatgcaattttctgacacctttctcacatattcactaccttc |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9179381 |
attcttgaatggctttttcttctgcatcaccatatgttccttcagatttcatatgggcaatgcaattttctgatacctttctcacatattcactaccttc |
9179282 |
T |
|
| Q |
160 |
tagtgttctcacctttgtacttcgaataaatttctcaaagggacctaaaaacacccaaaaataagtgagtacata |
234 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||| || |||| | ||| ||||||||||| |
|
|
| T |
9179281 |
tagtgttc---------tacttcgaataaatttctcaaagagacctaaacactcccatagatacgtgagtacata |
9179216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University