View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_32 (Length: 350)

Name: NF10179_low_32
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_32
NF10179_low_32
[»] chr8 (2 HSPs)
chr8 (164-331)||(23438481-23438650)
chr8 (164-333)||(23438733-23438904)
[»] chr6 (1 HSPs)
chr6 (187-333)||(10783017-10783165)
[»] chr2 (2 HSPs)
chr2 (183-333)||(8673987-8674139)
chr2 (294-333)||(8674230-8674269)
[»] chr1 (2 HSPs)
chr1 (294-333)||(50508281-50508320)
chr1 (41-73)||(50508391-50508423)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 164 - 331
Target Start/End: Complemental strand, 23438650 - 23438481
Alignment:
Q  164 gatatcaaatattgcttctaatgtaatcaattccattagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||    
T  23438650 gatatcaaatattgcttctaatgtaatcaattccgttagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttccaaagaca 23438551  T
Q  264 ttaattaaaatatttttataatg--nnnnnnntagatttacctcttcttttctcactttccatgaaggcc 331  Q
    | |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||    
T  23438550 tcaattaaaatatttttataatgaaagcaaaatagatttacctcttcttttctcactttccatgaaggcc 23438481  T

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Target: chr8; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 164 - 333
Target Start/End: Original strand, 23438733 - 23438904
Alignment:
Q  164 gatatcaaatattgcttctaatgtaatcaattccattagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  23438733 gatatcaaatattgcttctaatgtaatcaattccgttagtgcaagatatacaaaaaatgtatatctactaatgaatgcttaaaaatattttcaaaacaca 23438832  T
Q  264 ttaattaaaatatttttataatg--nnnnnnntagatttacctcttcttttctcactttccatgaaggccct 333  Q
    | |||||||||||||||| ||||         |||||||||||||||||||||||||||||||| |||||||    
T  23438833 tcaattaaaatatttttagaatgaaaacaaaatagatttacctcttcttttctcactttccatgcaggccct 23438904  T

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Target: chr6 (Bit Score: 93; Significance: 3e-45; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 333
Target Start/End: Original strand, 10783017 - 10783165
Alignment:
Q  187 taatcaattccattagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacacattaattaaaatatttttataatg 286  Q
    |||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  10783017 taataaattccgttagtgcaagatatacaaaaaatgggtatctactattgaatgcttaaaaatattttcaaaacacatcaattaaaatatttttagaatg 10783116  T
Q  287 --nnnnnnntagatttacctcttcttttctcactttccatgaaggccct 333  Q
             ||||||||||||||||||||||||||||||||||||||||    
T  10783117 aaaacaacatagatttacctcttcttttctcactttccatgaaggccct 10783165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 183 - 333
Target Start/End: Complemental strand, 8674139 - 8673987
Alignment:
Q  183 aatgtaatcaattccattagcgcaagatatacaaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacacattaattaaaatatttttat 282  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  8674139 aatgtaatcaattccgttagcacaagatatataaaaaatgtgtatctactattgaatgcttaaaaatattttcaaaacacatcaattaaaatatttttag 8674040  T
Q  283 aatg--nnnnnnntagatttacctcttcttttctcactttccatgaaggccct 333  Q
    || |         |||||||||||||||||||||||||||| |||||||||||    
T  8674039 aacgaaaacaaaatagatttacctcttcttttctcactttctatgaaggccct 8673987  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 294 - 333
Target Start/End: Original strand, 8674230 - 8674269
Alignment:
Q  294 tagatttacctcttcttttctcactttccatgaaggccct 333  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  8674230 tagatttacctcttcttttctcactttccatgaaggccct 8674269  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 333
Target Start/End: Complemental strand, 50508320 - 50508281
Alignment:
Q  294 tagatttacctcttcttttctcactttccatgaaggccct 333  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  50508320 tagatttacctcatcttttctcactttccatgaaggccct 50508281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 50508423 - 50508391
Alignment:
Q  41 taaaacaaggctaggccacaatgtatggagact 73  Q
    ||||||||||||||||||||||||||| |||||    
T  50508423 taaaacaaggctaggccacaatgtatgtagact 50508391  T

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