View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_33 (Length: 348)
Name: NF10179_low_33
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 73 - 331
Target Start/End: Original strand, 4369493 - 4369750
Alignment:
| Q |
73 |
aattacttttcgcttttcaaaccaagactacagaccaaatgttcgatttnnnnnnnnnngtgatacttgatcctgccgaacatatttacctttctctttc |
172 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4369493 |
aattacttttcgcttttcaaaccaagactacagaccaaatgttcgatttaaaaaaaaa-gtgatacttgatcctgccgaacatatttacctttctctttc |
4369591 |
T |
|
| Q |
173 |
tatggcacttttggaaagactcctccgtatcttatctttagctctctccatatcctcataaatgaaacccatcatcgggaccacggttgagttgaccata |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4369592 |
tatggcacttttggaaagactcctccgtatcttatctttagctctctccatatcctcataaatgaaacccatcatcgggaccacggttgagttgaccata |
4369691 |
T |
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| Q |
273 |
agaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaa |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4369692 |
agaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaa |
4369750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 137 - 331
Target Start/End: Original strand, 4365162 - 4365356
Alignment:
| Q |
137 |
acttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccatatcctcataaatg |
236 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4365162 |
acttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccattgcctcataaatg |
4365261 |
T |
|
| Q |
237 |
aaacccatcatcgggaccacggttgagttgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaa |
331 |
Q |
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| T |
4365262 |
aagcccatgatcgggaccatggttgaatcgaccataagaagcaaattcagcagaggttttacacctttataacaaatcataacatatttccaaaa |
4365356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 135 - 244
Target Start/End: Original strand, 4359767 - 4359876
Alignment:
| Q |
135 |
atacttgatcctgccgaacatatttacctttctctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccatatcctcataaa |
234 |
Q |
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||||| |||||||||||||||||||||||||| |||||| || || || |||||||||| || |||||| ||| ||||| || |||| ||||||||| |
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| T |
4359767 |
atactcgatcctgccgaacatatttacctttccctttctttgtcatcttcggaaagactcttctgtatctcctctatagctttcaccattgcctcataaa |
4359866 |
T |
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| Q |
235 |
tgaaacccat |
244 |
Q |
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|||||||||| |
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| T |
4359867 |
tgaaacccat |
4359876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4369420 - 4369463
Alignment:
| Q |
1 |
aattgtttgtcccatctttcatcaatgattttctgtagatgcat |
44 |
Q |
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| T |
4369420 |
aattgtttgtcccatctttcatcaatgattttctgtagatgcat |
4369463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 4365092 - 4365140
Alignment:
| Q |
73 |
aattacttttcgcttttcaaaccaagactacagaccaaatgttcgattt |
121 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| |||| |
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| T |
4365092 |
aattacttttcgcttttcaaaccaagactacagaaaaaatgttcaattt |
4365140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 5725986 - 5725942
Alignment:
| Q |
287 |
cagaggttttacacctttataacaaatcataacatatttccaaaa |
331 |
Q |
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|||||| ||| |||||||||||||||||||||||| ||||||||| |
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| T |
5725986 |
cagaggatttgcacctttataacaaatcataacatctttccaaaa |
5725942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 241
Target Start/End: Complemental strand, 4415120 - 4415047
Alignment:
| Q |
168 |
ctttctatggcacttttggaaagactcctccgtatcttatctttagctctctccatatcctcataaatgaaacc |
241 |
Q |
| |
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||||||||| ||| ||||||||||||||| ||||||| ||||||||| ||||| ||||||||||| |||| |
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| T |
4415120 |
ctttctatgacacctttggaaagactccttcgtatctcctctttagcttgctccaatgcctcataaatggaacc |
4415047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 4359931 - 4359963
Alignment:
| Q |
299 |
acctttataacaaatcataacatatttccaaaa |
331 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
4359931 |
acctttataacaaatcataacatttttccaaaa |
4359963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 4365020 - 4365048
Alignment:
| Q |
1 |
aattgtttgtcccatctttcatcaatgat |
29 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
4365020 |
aattgtttgtcccatctttcatcaatgat |
4365048 |
T |
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