View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_35 (Length: 342)
Name: NF10179_low_35
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_35 |
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| [»] scaffold0350 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 73 - 331
Target Start/End: Complemental strand, 21136806 - 21136548
Alignment:
| Q |
73 |
ttaaacttcattacactctcttcccctccaataaaatatctcccctcttcctttgttgaagtaaaatgaccctaaatgggtgaaggtaaataaatttcaa |
172 |
Q |
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| T |
21136806 |
ttaaacttcattacactctcttcccctccaataaaatatctcccctcttcctttgttgaagtaaaatgaccctaaatgggtgaaggtaaataaatttcaa |
21136707 |
T |
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| Q |
173 |
cctatcacaaatacataatggttaaatgaatggccattggtttattcacaaaaagaaaaatatgaacgaccttttgaaccaccgattaatatagttattc |
272 |
Q |
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| T |
21136706 |
ccaatcacaaatacataatggttaaatgaatggccattggtttattcacaaaaagaaaaatatgaacgatctttcgaaccaccgattaatatagttattc |
21136607 |
T |
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| Q |
273 |
tagaaaggagggcatgttgtataagagttaagatcctctccatttatattcttcttcat |
331 |
Q |
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| T |
21136606 |
taaaaagcagggcatgttgtataagagttaagatcctctccatttatattcttcttcat |
21136548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0350 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0350
Description:
Target: scaffold0350; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Complemental strand, 1318 - 1278
Alignment:
| Q |
28 |
tggtggccggagtttgaactcca-accttatatatattatg |
67 |
Q |
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| T |
1318 |
tggtggccggagtttgaactccagaccttacatatattatg |
1278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 6038266 - 6038306
Alignment:
| Q |
28 |
tggtggccggagtttgaactcca-accttatatatattatg |
67 |
Q |
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| T |
6038266 |
tggtggccggagtttgaactccagaccttacatatattatg |
6038306 |
T |
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