View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_37 (Length: 331)
Name: NF10179_low_37
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 41342762 - 41342514
Alignment:
| Q |
27 |
taagattactaaaactctaacttgaaagcccaccaacnnnnnnntctaatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccg |
126 |
Q |
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| T |
41342762 |
taagactactaaaactctaacttgaa-gcccaccaacaaaaaaatctcatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccg |
41342664 |
T |
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| Q |
127 |
gctagagtcaacattatatatttaagattgaatctgtaaaaacttaagagccaacttattgtttctc----ttaccttcattggcttccaatcgaagtgg |
222 |
Q |
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| T |
41342663 |
gctagagtcaacattatatatttaagatagaatatttaaaaacttaagagccaacttattgtttctcttacttaccttcattggcttccaatcgaagtgg |
41342564 |
T |
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| Q |
223 |
aagtgagagttcaagtggcaactcaacgttgagtgagccaaatgcaatgc |
272 |
Q |
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| T |
41342563 |
aagtgagagttcaagtggcaactcaacgttgagtaagccaaatacaatgc |
41342514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Complemental strand, 41342488 - 41342447
Alignment:
| Q |
276 |
aaatgacatttatattcaaagcagtggcggagctaggattat |
317 |
Q |
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| T |
41342488 |
aaatgacatttatattcaaagcagtggcggagccaggattat |
41342447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 326
Target Start/End: Original strand, 10081093 - 10081125
Alignment:
| Q |
294 |
aagcagtggcggagctaggattattgtaaagcc |
326 |
Q |
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| T |
10081093 |
aagcagtggcggagccaggattattgtaaagcc |
10081125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 31377337 - 31377370
Alignment:
| Q |
293 |
aaagcagtggcggagctaggattattgtaaagcc |
326 |
Q |
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| T |
31377337 |
aaagcagtggcggagccaggattattgtaaagcc |
31377370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 324
Target Start/End: Complemental strand, 34383503 - 34383475
Alignment:
| Q |
296 |
gcagtggcggagctaggattattgtaaag |
324 |
Q |
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| T |
34383503 |
gcagtggcggagctaggattattgtaaag |
34383475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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