View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_4 (Length: 502)
Name: NF10179_low_4
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 40 - 493
Target Start/End: Complemental strand, 45135752 - 45135299
Alignment:
| Q |
40 |
cttattgattaatgagaggttaattttaactcttatttgtagtggttgacatggttatgttgcaaaccttattgtagaaaaatgcaggcaaatgtggctg |
139 |
Q |
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| T |
45135752 |
cttattgattaatgagaggttaattttaactcttatttgtagtggttgacatggttatgttgcaaaccttattgtagaaaaatgtaggcaaatgtggctg |
45135653 |
T |
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| Q |
140 |
caattgctgttgcagagacttctaaaatcattatattctaaaactttgtattgaggttacagactacaaattagaactatgataacaaaaatataacgaa |
239 |
Q |
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| T |
45135652 |
caattgctgttgcagagacttctaaaatcattatattctaaaactttgtattgaggttacagactacaaattagaactatgaaaacaaaaatataacgaa |
45135553 |
T |
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| Q |
240 |
agaagtggctgtataaggaattattgcggcaagttatgaagagaatgattatgataccttcatgttaccagctctttttccgaacttttgaatcaacaat |
339 |
Q |
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| T |
45135552 |
agaagtggctgtataaggaattattgcggcaagttatgaagagaatgattatgataccttcatgttaccagctctttttccgaacttttgagtcaacaat |
45135453 |
T |
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| Q |
340 |
accaaagagtcaattgtgtgtttgggttcacacagttttctcgttttacatattacaagttttcctatggaggaatgtgatacggtgtcaatgttttcat |
439 |
Q |
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| T |
45135452 |
accaaagagtcaattgtgtgtttgggttcacacagttttctcgttttacatattacaagttttcctatggaggaatgtgatgcggtgtcaatgttttcat |
45135353 |
T |
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| Q |
440 |
ggtggatgaaattttttagaagaatactctaaatcgttttcatggtctctgctt |
493 |
Q |
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| T |
45135352 |
ggtggatgaaattttttagaagaatactctaaatcgttttcatggtcactgctt |
45135299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 290 - 353
Target Start/End: Complemental strand, 45123523 - 45123460
Alignment:
| Q |
290 |
atgataccttcatgttaccagctctttttccgaacttttgaatcaacaataccaaagagtcaat |
353 |
Q |
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| T |
45123523 |
atgataccttcatgttaccagctcttcttccaaacttttgagtcaacaaaaccaaagagtcaat |
45123460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 20102178 - 20102146
Alignment:
| Q |
144 |
tgctgttgcagagacttctaaaatcattatatt |
176 |
Q |
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| T |
20102178 |
tgctgttgcagagacctctaaaatcattatatt |
20102146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 46209120 - 46209152
Alignment:
| Q |
116 |
gaaaaatgcaggcaaatgtggctgcaattgctg |
148 |
Q |
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| T |
46209120 |
gaaaaatgcaggcaaatgaggctgcaattgctg |
46209152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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