View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_41 (Length: 324)

Name: NF10179_low_41
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_41
NF10179_low_41
[»] chr2 (4 HSPs)
chr2 (121-324)||(3751149-3751352)
chr2 (9-62)||(3751032-3751085)
chr2 (121-196)||(18224612-18224687)
chr2 (125-196)||(9661994-9662065)
[»] chr3 (2 HSPs)
chr3 (121-293)||(31017492-31017665)
chr3 (126-268)||(32615394-32615540)
[»] chr4 (2 HSPs)
chr4 (121-294)||(38157158-38157332)
chr4 (121-294)||(55017873-55018047)
[»] chr1 (1 HSPs)
chr1 (121-235)||(7384641-7384757)
[»] chr8 (4 HSPs)
chr8 (121-196)||(36900944-36901019)
chr8 (121-196)||(17706382-17706457)
chr8 (123-196)||(36900116-36900190)
chr8 (123-192)||(17707216-17707286)
[»] chr7 (4 HSPs)
chr7 (121-196)||(28556462-28556537)
chr7 (121-196)||(706960-707035)
chr7 (121-184)||(33823991-33824054)
chr7 (123-196)||(707918-707994)


Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 121 - 324
Target Start/End: Original strand, 3751149 - 3751352
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggtttggtctctcaaactactaacttatc 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3751149 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggtttggtctctcaaactactaactgatc 3751248  T
Q  221 attctgtcaatccacataagccactaacgtcatctcagccttcgccacatcagcctctgtttgccagcacatcannnnnnnaacagaagttgacgttatg 320  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       |||||||||||||||||||    
T  3751249 attctgttagtccacataagccactaacgtcatctcagccttcgccacgtcagcctctgtttgccagcacatcatttttttaacagaagttgacgttatg 3751348  T
Q  321 gatc 324  Q
    ||||    
T  3751349 gatc 3751352  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 3751032 - 3751085
Alignment:
Q  9 agaagcaaaggctgaaaatgatattaccttcgctgccttcgtcatcctagaatc 62  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3751032 agaaccaaaggctgaaaatgatattaccttcgctgccttcgtcatcctagaatc 3751085  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 18224612 - 18224687
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||||||| ||||| |||||||||||||| || |||||||||||||| |||||  |||||||  ||||||||||    
T  18224612 tcttgtttttaaatttaaaattttgatatttacgttttttcaatttcgtttctataaacatttgagtttttggttt 18224687  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 9661994 - 9662065
Alignment:
Q  125 gtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||| ||||| |||||||||| |||  | ||||||| ||||||| ||||| | |||||||||||||||||    
T  9661994 gtttttaaatttcaaattttgatgtttaagttttttcattttcgtccctatgcaaatttgcatttttggttt 9662065  T

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Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 121 - 293
Target Start/End: Original strand, 31017492 - 31017665
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt-ggtctctcaaactactaacttat 219  Q
    |||||||||| ||||||||||||||||||||  | |||||||||||||||  |||| |||||||| |||||| ||| |||| ||||||||||  ||||||    
T  31017492 tcttgtttttaaatttgaaattttgatatttaggttttttcaatttcgtccttatgaacatttgcgtttttgattttggtccctcaaactacccacttat 31017591  T
Q  220 cattctgtcaatccacataagccactaacgtcatctcagccttcgccacatcagcctctgtttgccagcacatc 293  Q
    |||||| ||| ||||| |||||||| |||| ||||||| |||| | |||||| ||||  |||||||||||||||    
T  31017592 cattctatcagtccacgtaagccacaaacgacatctcaacctttgtcacatcggccttcgtttgccagcacatc 31017665  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 268
Target Start/End: Original strand, 32615394 - 32615540
Alignment:
Q  126 tttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt-ggtctctcaaac-tactaacttatcat- 222  Q
    ||||| ||||| ||| |||| | ||| || ||||||||||||||| ||||| | |||||| |||||||||| |||| || |||  || | |||||||||     
T  32615394 tttttaaatttcaaaatttggtgtttacgttttttcaatttcgtccctatgcaaatttgcgtttttggttttggtccctaaaaagtagtcacttatcatc 32615493  T
Q  223 -tctgtcaatccacataagccactaacgtcatctcagccttcgccac 268  Q
     |||||||  |||| ||||||||||||| || |||||||||||||||    
T  32615494 atctgtcaggccacgtaagccactaacgccaactcagccttcgccac 32615540  T

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Target: chr4 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 38157332 - 38157158
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttgg-tttggtctctcaaactactaacttat 219  Q
    ||||| |||| |||||||||||||||||||| ||  |||||||||||||| ||||| |||||||| ||||||| |||  || |||||| |||| | ||||    
T  38157332 tcttgattttaaatttgaaattttgatatttacgtattttcaatttcgtccctatgaacatttgcgtttttggttttaatccctcaaattactcatttat 38157233  T
Q  220 cattctgtcaatccacataagccactaacgtcatctcagccttcgccacatcagcctctgtttgccagcacatca 294  Q
    |||||||||  ||||| |||||||| |||| ||| |||||||| ||||| || ||||| ||||||||||||||||    
T  38157232 cattctgtctttccacgtaagccacaaacgccatatcagcctttgccacgtcggcctccgtttgccagcacatca 38157158  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 55018047 - 55017873
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttgg-tttggtctctcaaactactaacttat 219  Q
    ||||| |||| |||||||||||||||||||| ||  |||||||||||||| ||||| |||| ||| ||||||| |||  || |||||| |||| | ||||    
T  55018047 tcttgattttaaatttgaaattttgatatttacgtattttcaatttcgtccctatgaacatgtgcgtttttggttttaatccctcaaattactcatttat 55017948  T
Q  220 cattctgtcaatccacataagccactaacgtcatctcagccttcgccacatcagcctctgtttgccagcacatca 294  Q
    |||||||||  ||||| |||||||| |||  ||| |||||||| ||||| || || || ||||||||||||||||    
T  55017947 cattctgtctttccacgtaagccacaaacaccatatcagcctttgccacgtcggcgtccgtttgccagcacatca 55017873  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 235
Target Start/End: Original strand, 7384641 - 7384757
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtt-tttcaatttcgtctctatgtacatttgcatttttgg-tttggtctctcaaactactaactta 218  Q
    |||||||||| ||||||||||||||||||||  | || |||||||||||||| |||| |||||||  ||||||| ||||||| ||||||||||| |||||    
T  7384641 tcttgtttttaaatttgaaattttgatatttaagtttctttcaatttcgtctttatgaacatttgtgtttttggttttggtccctcaaactactcactta 7384740  T
Q  219 tcattctgtcaatccac 235  Q
    | |||||| || |||||    
T  7384741 ttattctgccagtccac 7384757  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 36900944 - 36901019
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||||||| |||||||||||||||||||| |  ||||||||||||||| ||||| |||||||| ||||||||||    
T  36900944 tcttgtttttaaatttgaaattttgatatttacattttttcaatttcgtccctatgaacatttgcgtttttggttt 36901019  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 17706457 - 17706382
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||||||| ||||| |||||||||||||| |  ||||||||||||||| || || |||||||| ||||||||||    
T  17706457 tcttgtttttaaatttaaaattttgatatttacattttttcaatttcgtccctctgaacatttgcgtttttggttt 17706382  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 196
Target Start/End: Complemental strand, 36900190 - 36900116
Alignment:
Q  123 ttgtttttgaatttgaaattttgatatttgcggttttt-caatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||||| ||||||||||||||| |||| || ||||| ||||||| || ||||| |||||||| ||||||||||    
T  36900190 ttgtttttaaatttgaaattttgacatttacgtttttttcaatttcatccctatgaacatttgcgtttttggttt 36900116  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 17707216 - 17707286
Alignment:
Q  123 ttgtttttgaatttgaaattttgatatttgcg-gtttttcaatttcgtctctatgtacatttgcatttttg 192  Q
    |||||||| ||||||||||||||| |||| ||  |||||||||||| || ||||| |||||||| ||||||    
T  17707216 ttgtttttaaatttgaaattttgacatttacgtttttttcaatttcatccctatgaacatttgcgtttttg 17707286  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 28556537 - 28556462
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||||||| |||||||||||||||||||| |  ||||||||||||||| || || |||||||| ||||||||||    
T  28556537 tcttgtttttaaatttgaaattttgatatttacattttttcaatttcgtccctctgaacatttgcgtttttggttt 28556462  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 707035 - 706960
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||||||| ||||| |||||||||||||| |  ||||||||||||||| || || |||||||| ||||||||||    
T  707035 tcttgtttttaaatttaaaattttgatatttacattttttcaatttcgtccctctgaacatttgcgtttttggttt 706960  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 184
Target Start/End: Complemental strand, 33824054 - 33823991
Alignment:
Q  121 tcttgtttttgaatttgaaattttgatatttgcggtttttcaatttcgtctctatgtacatttg 184  Q
    |||||||||| |||||||||||||||||||| || ||||||||||||||| || || |||||||    
T  33824054 tcttgtttttaaatttgaaattttgatatttacgttttttcaatttcgtccctctgaacatttg 33823991  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 196
Target Start/End: Original strand, 707918 - 707994
Alignment:
Q  123 ttgtttttgaatttgaaattttgatatttgcggtttt---tcaatttcgtctctatgtacatttgcatttttggttt 196  Q
    |||||||| ||||||||||||||| |||| || ||||   |||||||| || ||||| |||||||| ||||||||||    
T  707918 ttgtttttaaatttgaaattttgacatttacgtttttttttcaatttcatccctatgaacatttgcgtttttggttt 707994  T

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