View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_44 (Length: 317)
Name: NF10179_low_44
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 306
Target Start/End: Original strand, 28926029 - 28926317
Alignment:
| Q |
18 |
ttattgatttgagctttttcgtacacttttttctcttcactgatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagttgctcac |
117 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28926029 |
ttattgatttgagctttttcgtacacttctttctcttcactgatttaactcttgacgtttcatcgaagtcgtcacaatcagatcctataaagttgctcac |
28926128 |
T |
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| Q |
118 |
atcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaata |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
28926129 |
atcagaatcaccagtatcatcttccccctcacctatttcatacggatccaagtcacgcttgtttttcccatttttaacgatgtcacgggcaatgtaaata |
28926228 |
T |
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| Q |
218 |
tcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatacctat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28926229 |
tcctgagaattcagcccttctctttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctat |
28926317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 47 - 306
Target Start/End: Original strand, 28916826 - 28917082
Alignment:
| Q |
47 |
tttctcttcactgatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccct |
146 |
Q |
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|||||||| |||| |||||||||||||||| || | ||||||||| ||||||| |||||||||| || ||||||| ||||| ||||| |||||||| |
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| T |
28916826 |
tttctctttactggtttaactcttgacgtgccaaccaagtcgtcagaatcagaacctataaagtcacttgcatcagattcaccggtatc---ttccccct |
28916922 |
T |
|
| Q |
147 |
cacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaatatcctgagaattcagcccttctctttcttt |
246 |
Q |
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||||| ||||||| || ||||||||||||||| || |||||||||| |||| |||||||||| |||| ||||||||||||| |||||| ||| ||| |
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| T |
28916923 |
cacctctttcatacggttccaagtcacgcttgatgtttccatttttaatgatgtcacgggcaatataaacatcctgagaattccacccttcctttttttt |
28917022 |
T |
|
| Q |
247 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatacctat |
306 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28917023 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcatatctat |
28917082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 41 - 301
Target Start/End: Original strand, 28902417 - 28902662
Alignment:
| Q |
41 |
cacttttttctcttcactgatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatctt |
140 |
Q |
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||||| |||||| |||| |||||||||||||||||| || | ||||| ||||||||||| |||||||||| ||| ||||||| ||||||||||| |||| |
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| T |
28902417 |
cacttctttctcctcaccgatttaactcttgacgtgccaaccaagtcatcacaatcagaacctataaagtcactcgcatcagattcaccagtatcgtctt |
28902516 |
T |
|
| Q |
141 |
ccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaatatcctgagaattcagcccttctct |
240 |
Q |
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|||||||||||| ||||||| |||| ||| |||||||||| |||| |||||||| | |||| |||||||||||||||||||||| | |
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| T |
28902517 |
ccccctcacctacttcatat---------------ttgttttttccatttttaatgatgtcacgggcagtataaacatcctgagaattcagcccttcttt |
28902601 |
T |
|
| Q |
241 |
ttctttgataacttgataatattctaaaaagtaactttcaactgtatctggatctctcata |
301 |
Q |
| |
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|| |||||||||||||||||||| |||||||||||||| | ||||||||||||||||||| |
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| T |
28902602 |
tttcttgataacttgataatattcaaaaaagtaactttctattgtatctggatctctcata |
28902662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 47 - 301
Target Start/End: Original strand, 28892469 - 28892717
Alignment:
| Q |
47 |
tttctcttcactgatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttccccct |
146 |
Q |
| |
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|||||| |||| |||||||||| || ||| ||||| | ||| ||| ||||||| |||| ||||| || |||||||| ||||| |||||||||||||||| |
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| T |
28892469 |
tttctcctcaccgatttaactcctgccgtatcatccaggtcatcataatcagaatctatgaagttactgacatcagactcaccggtatcatcttccccct |
28892568 |
T |
|
| Q |
147 |
cacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgccacgggcaatgtaaatatcctgagaattcagcccttctctttcttt |
246 |
Q |
| |
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||||||||||||||||| |||| ||||| ||| | |||| ||| | ||||||||| |||| | ||||||||||||||||||| ||| || |
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| T |
28892569 |
cacctatttcatatgga------tcacacttgttttttctatttataatagtatcacgggcaaaataaacttgctgagaattcagcccttcttttttctt |
28892662 |
T |
|
| Q |
247 |
gataacttgataatattctaaaaagtaactttcaactgtatctggatctctcata |
301 |
Q |
| |
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||||| ||||||||| || |||||||||||||| ||||||||||||| ||||| |
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| T |
28892663 |
gataatttgataataatcaaaaaagtaactttcttgtgtatctggatctttcata |
28892717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 141
Target Start/End: Original strand, 28935654 - 28935748
Alignment:
| Q |
47 |
tttctcttcactgatttaactcttgacgtgtcatcgaagtcgtcacaatcagatcctataaagttgctcacatcagaatcaccagtatcatcttc |
141 |
Q |
| |
|
|||||| |||| |||||||||| | |||||||| | ||||||||||||||| |||||||||| ||||||||||| ||||||| ||||||||| |
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| T |
28935654 |
tttctcctcaccgatttaactccggctgtgtcatctaggtcgtcacaatcagaacctataaagtaactcacatcagagtcaccagcatcatcttc |
28935748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 102 - 222
Target Start/End: Original strand, 34009511 - 34009631
Alignment:
| Q |
102 |
ctataaagttgctcacatcagaatcaccagtatcatcttccccctcacctatttcatatggatccaagtcacgcttgtctttcccatttttaacgatgcc |
201 |
Q |
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||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| | ||| |||| |||| | |
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| T |
34009511 |
ctataaagtcactcacatcagattcaccagtatcatcttccccctcacctacttcatatggatccaagtcacacttgttttttcaattgttaatgatgtc |
34009610 |
T |
|
| Q |
202 |
acgggcaatgtaaatatcctg |
222 |
Q |
| |
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||||||||| |||| |||||| |
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| T |
34009611 |
acgggcaatataaacatcctg |
34009631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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