View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_46 (Length: 312)

Name: NF10179_low_46
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_46
NF10179_low_46
[»] chr4 (1 HSPs)
chr4 (15-243)||(37875717-37875936)
[»] chr2 (1 HSPs)
chr2 (15-219)||(23895745-23895938)
[»] chr8 (3 HSPs)
chr8 (43-204)||(18097047-18097208)
chr8 (43-204)||(18139045-18139204)
chr8 (106-219)||(18082644-18082757)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 37875936 - 37875717
Alignment:
Q  15 agcaacaaggccttaggcttttccacattacataaacagagtagagtaaataggaaatttatatctatcaattaggttttaattgctaccaagaacaagt 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37875936 agcaacaaggccttaggcttttccacattacataaacatagtagagtaaataggaaatttatatcaatcaattaggttttaattgctaccaagaacaagt 37875837  T
Q  115 aggttatatatctcatttctccatacaaatgaatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctg 214  Q
    ||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37875836 aggttatatatctcatttctccatac-----------aaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctg 37875748  T
Q  215 c--cacatacagtttctaaacaacttcataa 243  Q
    |  ||||||||||||||||| ||||||||||    
T  37875747 ccacacatacagtttctaaataacttcataa 37875717  T

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Target: chr2 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 15 - 219
Target Start/End: Original strand, 23895745 - 23895938
Alignment:
Q  15 agcaacaaggccttaggcttttccacattacataaacagagtagagtaaataggaaatttatatctatcaattaggttttaattgctaccaagaacaagt 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23895745 agcaacaaggccttaggcttttccacattacataaacatagtagagtaaataggaaatttatatcaatcaattaggttttaattgctaccaagaacaagt 23895844  T
Q  115 aggttatatatctcatttctccatacaaatgaatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctg 214  Q
    |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895845 aggttatatatctcatttctccata-----------caaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacatgtgcagctg 23895933  T

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Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 43 - 204
Target Start/End: Complemental strand, 18097208 - 18097047
Alignment:
Q  43 tacataaacagagtagagtaaataggaaatttatatctatcaattaggttttaattgctaccaagaacaagtaggttatatatctcatttctccatacaa 142  Q
    |||||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18097208 tacataaacagagtagagtaaataggcaatttatttcaatcaattaggttttaattgccaccaagaacaagtaggttatatatctcatttctccatacaa 18097109  T
Q  143 atgaatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcaca 204  Q
    || ||||||||||||||| || |||||||||||||||||||| |||||||||| ||||||||    
T  18097108 ataaatgtcaaataacaaagtgacatagtgttatggagtatagaactctggaattagtcaca 18097047  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 43 - 204
Target Start/End: Original strand, 18139045 - 18139204
Alignment:
Q  43 tacataaacagagtagagtaaataggaaatttatatctatcaattaggttttaattgctaccaagaacaagtaggttatatatctcatttctccatacaa 142  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  18139045 tacataaacaaagtagagtaaataggcaatttatatcaatcaattaggttttaattgctaccaagaacaagtagattatatatctcatttctccatacaa 18139144  T
Q  143 atgaatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcaca 204  Q
    || ||||||||||||||| || ||  |||||||||||||||| |||||||||| ||||||||    
T  18139145 ataaatgtcaaataacaaagtgac--agtgttatggagtatagaactctggaattagtcaca 18139204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 18082757 - 18082644
Alignment:
Q  106 agaacaagtaggttatatatctcatttctccatacaaatgaatgtcaaataacaatgtcacatagtgttatggagtatacaactctggaactagtcacat 205  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||| |||||||||| ||| |||||    
T  18082757 agaacaagtaggttatatatctcatttctccatacaaacaaatgtcaaaaaacaaagtcacatagtgttatggagtatagaactctggaattagacacat 18082658  T
Q  206 gtgcagctgccaca 219  Q
    || || ||||||||    
T  18082657 gttcatctgccaca 18082644  T

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