View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_47 (Length: 309)
Name: NF10179_low_47
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 53402005 - 53401803
Alignment:
| Q |
1 |
tgtcatttcagtgcattgaaacttttcaccctattttctttgcattactggacagaaatcttttaacccatgggtcccacataaactgaacttttctttc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53402005 |
tgtcatttcagtgcattgaaacttttcaccctattttctttgcattactggacggaaatcttttaacccatgggtcccacataaactgaacctttctttc |
53401906 |
T |
|
| Q |
101 |
ctctcggacagtaaaccaaacaatggaaggcactgattgcagaaaactttccatgatattgctatccatcctccctcaatctttagaaccaaacagcccc |
200 |
Q |
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||||| ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53401905 |
ctctctgacagcaaaccaaacaatcgaaggcacggattgcagaaaactttccatgatattgctatccatcctccctcaatttttagaaccaaacagcccc |
53401806 |
T |
|
| Q |
201 |
tta |
203 |
Q |
| |
|
||| |
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|
| T |
53401805 |
tta |
53401803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 6230075 - 6229877
Alignment:
| Q |
1 |
tgtcatttcagtgcattgaaacttttcaccctattttctttgcattactggacagaaatcttttaacccatgggtcccacataaactgaacttttctttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
6230075 |
tgtcatttcagtgcattgaaacttttcaccctactttctttgcatcactggacggaaatcttt-aacgcatgggtcccacataaactgaacctttctttc |
6229977 |
T |
|
| Q |
101 |
ctctcggacagtaaaccaaacaatggaaggcactgattgcagaaaactttccatgatattgctatccatcctccctcaatctttagaaccaaacagcccc |
200 |
Q |
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||||| || || |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6229976 |
ctctctgatagcaaaccaaacaatggaaagcacagattgcagaaaactttccatgatattgctatccatcctccctcaatctttagaaccaaacagcccc |
6229877 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 12005902 - 12006092
Alignment:
| Q |
4 |
catttcagtgcattgaaacttttcaccctattttctttgcattactggacagaaatcttttaacccatgggtcccacataaactgaacttttctttcctc |
103 |
Q |
| |
|
|||||||| ||||||||||| ||| || |||||| || |||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||||| |
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| T |
12005902 |
catttcagcacattgaaacttcccacgctgctttcttcgctctactggacggaaagttttcaacccatgggtcccacataa-ctgaacctttctttcctc |
12006000 |
T |
|
| Q |
104 |
tcggacagtaaaccaaacaatggaaggcactgattgcagaaaactttccatgatattgctatccatcctccctcaatctttagaaccaaaca |
195 |
Q |
| |
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|| ||| |||||||||||||||||||| |||| || |||||||||| | ||||||||||| ||||| | ||||||||||||||||||| |
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| T |
12006001 |
tctcacaaataaccaaacaatggaaggcacagatttcaaaaaactttccttaatattgctatctgtcctcacacaatctttagaaccaaaca |
12006092 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 11904738 - 11904653
Alignment:
| Q |
201 |
ttagtacgggtcgttgaagtgacaacttgagagttgcatcgcttcagtgcctgagcattttgacgcgtgtctctatggctacgttt |
286 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
11904738 |
ttagtacgggtcattgaagtgacaacttgagagttgcatcgcttcagtgccggagcattttgacgcgtgtctctgtggctacgttt |
11904653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 195
Target Start/End: Original strand, 11943422 - 11943612
Alignment:
| Q |
4 |
catttcagtgcattgaaacttttcaccctattttctttgcattactggacagaaatcttttaacccatgggtcccacataaactgaacttttctttcctc |
103 |
Q |
| |
|
|||||||| ||||||||||| ||| || |||||| || |||||||| |||| ||| |||||||||||||||||||| |||||| ||||||||||| |
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|
| T |
11943422 |
catttcagcacattgaaacttcccacgctgctttcttcgctctactggacggaaagttttcaacccatgggtcccacataa-ctgaacctttctttcctc |
11943520 |
T |
|
| Q |
104 |
tcggacagtaaaccaaacaatggaaggcactgattgcagaaaactttccatgatattgctatccatcctccctcaatctttagaaccaaaca |
195 |
Q |
| |
|
|| |||| |||||||||||||||||||| |||| || |||||||||| | ||||||||||| ||||| | ||||||||||||||||||| |
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|
| T |
11943521 |
tctgacaaataaccaaacaatggaaggcacagatttcaaaaaactttccttaatattgctatctgtcctcacacaatctttagaaccaaaca |
11943612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 203
Target Start/End: Original strand, 2736292 - 2736491
Alignment:
| Q |
4 |
catttcagtgcattgaaacttttcaccctattttctttgcattactggacagaaatcttttaacccatgggtcccacataaactgaacttttctttcctc |
103 |
Q |
| |
|
|||||| | |||||||||||||||||| | |||||| ||| ||||||| |||| ||| |||||||||| |||| ||||| |||| ||||||||||| |
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|
| T |
2736292 |
catttctgggcattgaaacttttcaccatgctttcttcgcactactggatggaaaagtttcaacccatgggccccatataaagtgaaaatttctttcctc |
2736391 |
T |
|
| Q |
104 |
tcggacagtaaaccaaacaatggaaggcactgattgcagaaaactttccatgatattgctatccatcctccctcaatctttagaaccaaacagcccctta |
203 |
Q |
| |
|
|| || ||| |||||||| ||||||| || |||| | |||||| |||||| ||||| |||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2736392 |
tctgatagtgaaccaaaccatggaagatacggattacggaaaacattccattatatttctatttgtcctccctcaatctttagaaccaaacagcccctta |
2736491 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 13781788 - 13781979
Alignment:
| Q |
1 |
tgtcatttcagtgcattgaaacttttcaccctattttctttgcattactggacagaaatcttttaacccatgggtcccacataaactgaacttttctttc |
100 |
Q |
| |
|
||||||||||||||||||||| ||| || | |||||||||| |||||||| |||| |||| || ||||| | |||||||||||| | | |||||||| |
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|
| T |
13781788 |
tgtcatttcagtgcattgaaattttctacgttgctttctttgcagtactggacggaaagctttcaatccatgagccccacataaactcatcatttctttc |
13781887 |
T |
|
| Q |
101 |
ctctcggacagtaaaccaaacaatggaaggcactgattgcagaaaactttccatgatattgctatccatcctccctcaatctttagaaccaa |
192 |
Q |
| |
|
||| | ||||||||||||||| ||||| ||||| ||| |||||||||||| |||||| ||||| |||||||||||||||||||||||| |
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| T |
13781888 |
ctcacagacagtaaaccaaacgatggagggcaccaattttgaaaaactttccattatattgatatccgtcctccctcaatctttagaaccaa |
13781979 |
T |
|
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