View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_48 (Length: 304)
Name: NF10179_low_48
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 11961431 - 11961720
Alignment:
| Q |
1 |
acttaatccatgtagcacgtctctcattctcccgtggactagcataaaccactgtaagtaaacatatctccctttgtgctttcattagcaagtggtgact |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
11961431 |
acttaatccatgtagcacgtctctcattctcccgtggactagcataaaccactgtaagtaaccatatctccctttgtgttttcattagcaagtggtgact |
11961530 |
T |
|
| Q |
101 |
gatgttcaccacccaattcgttattgatgtcacttatcaaatgcacttccaccaaatccactttagttataggcatatatattttccacctctaattgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
11961531 |
gatgttcaccacccaattcgttattgatgtcacttatcaaatgcacttccaccaaatccactttagttataggc----atattttccacctctaattgat |
11961626 |
T |
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| Q |
201 |
aattaggcccacttttgtgcacatgcccacttgtaatggttggaatttgtttaagcgtgtattatgctccttaataatagtgtaacttcctttg |
294 |
Q |
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||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11961627 |
aattacgcccacttttgtgcacatgcccacttgtaatagttggaatttgtttaagcgtgtattatgctccttaataatagggtaacttcctttg |
11961720 |
T |
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