View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_49 (Length: 298)
Name: NF10179_low_49
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 20 - 266
Target Start/End: Original strand, 8532383 - 8532631
Alignment:
| Q |
20 |
tagatggcctaaattaagtattattctactaaatttggttaaatttaagaaatagtgaaatgaannnnnnnncttctataataatatatcca-------- |
111 |
Q |
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| T |
8532383 |
tagatggcctaaattatgtattattctactaaatttggttaaattttagaaatagtgaaatgaaatttttt-cttctataataaaatatccaaataatga |
8532481 |
T |
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| Q |
112 |
tactgtgttatgttttgatgcaatagtgagcggctttctccatttatggggtttatcctttatttgtaaagtgtcatggtatgaatgaattacttctgaa |
211 |
Q |
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| T |
8532482 |
tactatgttatgttttgatgcaatagtgagcgattttatccatttatggggtttgtcctt-atttgtaaagtgtcatggtatga----attacttctgaa |
8532576 |
T |
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| Q |
212 |
taaccatccattatattatatactagtatactacagcaaaggtgcattttgttat |
266 |
Q |
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| T |
8532577 |
taaccatccattatatactatactggtatactacagcaaaggtacatttagttat |
8532631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 200 - 287
Target Start/End: Original strand, 8527020 - 8527115
Alignment:
| Q |
200 |
attacttctgaataacca----tccattatattatatacta----gtatactacagcaaaggtgcattttgttatatttcctactactatcttctt |
287 |
Q |
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| T |
8527020 |
attacttctgaataaccaacgatccattatattatatactaactagtatactacagcaaaggtgcattttgttatatttcctactactatcttctt |
8527115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Original strand, 1582563 - 1582656
Alignment:
| Q |
129 |
atgcaatagtgagcggctttctccatttatggggtttatcctttatttgtaaagtgtcatggtatgaatgaattacttctgaataaccatccattatat |
227 |
Q |
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| T |
1582563 |
atgcaatagtgagtgactttatccatatatggggtttatcctat-tttgtagagtgtcatggtatgagt----ttcttctgcataaccatccattatat |
1582656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 227
Target Start/End: Complemental strand, 1602252 - 1602159
Alignment:
| Q |
129 |
atgcaatagtgagcggctttctccatttatggggtttatcctttatttgtaaagtgtcatggtatgaatgaattacttctgaataaccatccattatat |
227 |
Q |
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| T |
1602252 |
atgcaatagtgagtgactttatccatatatggggtttatcctat-tttgtagagtgtcatggtatgagt----ttcttctgcataaccatccattatat |
1602159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 119 - 227
Target Start/End: Complemental strand, 8546219 - 8546116
Alignment:
| Q |
119 |
ttatgttttgatgcaatagtgagcggctttctccatttatggggtttatcctttatttgtaaagtgtcatggtatgaatgaattacttctgaataaccat |
218 |
Q |
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| T |
8546219 |
ttatgcttttatgcaataatgagtgactttatccatttatggggcttatcctat-tttgtagtgtgtcatggtatgagt----ttcttctgcataaccat |
8546125 |
T |
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| Q |
219 |
ccattatat |
227 |
Q |
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| T |
8546124 |
ccattatat |
8546116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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