View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_52 (Length: 295)
Name: NF10179_low_52
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 95 - 281
Target Start/End: Complemental strand, 32849393 - 32849207
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32849393 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
32849294 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaag |
281 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32849293 |
gagctcattcttccctggtttagattcaattatctgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattcaaaag |
32849207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 96 - 277
Target Start/End: Original strand, 17478275 - 17478455
Alignment:
| Q |
96 |
ttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctag |
195 |
Q |
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|||||||||||||| || ||| ||| || |||||||||||||||||||| ||||||||| |||||| |||||||||||||| | ||||| | || |||| |
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| T |
17478275 |
ttttgtactaattagtagttggtgt-cttgtacaaacagtggctgcttggtgaaccccacaatctactttttcaagaatttcactatttgatacgtctag |
17478373 |
T |
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| Q |
196 |
agctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattca |
277 |
Q |
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| T |
17478374 |
agctcattcttctctggtttaactccaattctctgctcagcttgcttcagaaatgtccgatgctgcaagttcttataattca |
17478455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 270
Target Start/End: Original strand, 4441971 - 4442145
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
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|||||||||||||| ||||||||| | | | || ||||||||||||||| |||||| | ||||||| |||||||||||||||| ||||| ||| || |
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| T |
4441971 |
gttttgtactaattgctacttgataatgtgg-acgaacagtggctgcttggtgaacctcgtgatctattttttcaagaatttcgctatttgcttcattta |
4442069 |
T |
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| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctca |
270 |
Q |
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|||||||||||||||||||||| | ||||| | |||| |||||||||| |||||||| |||| |||||||||| |
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| T |
4442070 |
gagctcattcttccctggtttaactccaattatctgctttccttgcttcaaaaatgtcctgtgctacaagttctca |
4442145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 277
Target Start/End: Complemental strand, 4427437 - 4427256
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
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|||||||||||||||||| ||||||| | || |||| |||||||||||| || |||||||||||| ||||||||||| || || ||||| |||||||| |
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| T |
4427437 |
gttttgtactaattactatttgatgtcat-gttcaaatagtggctgcttggagagccccatgatctaaattttcaagaactttgctatttgtttcgccta |
4427339 |
T |
|
| Q |
195 |
gagctcattcttccctggtttagattcaattctttgctcaacttgcttcaagaatgtcctatgcttcaagttctcatgattca |
277 |
Q |
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|| |||| |||| ||| | |||||||| | || |||||||||||| | ||||||||||||||||||||||| ||||| |
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| T |
4427338 |
gaactcactctttgtcggtgcaacatcaattctgtactgaacttgcttcaaaagtgtcctatgcttcaagttctcataattca |
4427256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 8382741 - 8382603
Alignment:
| Q |
130 |
aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagctcattcttccctggtttagattcaattcttt |
229 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||| ||| |||| |||| ||||||||||||||| | ||||||| | |
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| T |
8382741 |
aacagtggctgcttggtgaaccccgtgatctactttttcaagaattttgcaatttgcttcatttagatctcactcttccctggtttagctccaattctct |
8382642 |
T |
|
| Q |
230 |
gctcaacttgcttcaagaatgtcctatgcttcaagttct |
268 |
Q |
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|||| ||||||||| |||||||||| |||| |||||| |
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| T |
8382641 |
cctcagcttgcttcacaaatgtcctattcttcgagttct |
8382603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 268
Target Start/End: Complemental strand, 8366738 - 8366600
Alignment:
| Q |
130 |
aacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgcctagagctcattcttccctggtttagattcaattcttt |
229 |
Q |
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||||||||||||||| |||||||| |||||||| ||||||||| ||| || || || ||| |||| ||||||||||||||||| | ||||||| | |
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| T |
8366738 |
aacagtggctgcttggtgaaccccgtgatctactttttcaagatttttgctatctgcttcatttagatatcattcttccctggtttgactccaattctct |
8366639 |
T |
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| Q |
230 |
gctcaacttgcttcaagaatgtcctatgcttcaagttct |
268 |
Q |
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|||| ||||||||| |||||||||| ||||| ||||| |
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| T |
8366638 |
tctcagcttgcttcacaaatgtcctattcttcaggttct |
8366600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 216
Target Start/End: Original strand, 8341327 - 8341447
Alignment:
| Q |
95 |
gttttgtactaattactacttgatgttctagtacaaacagtggctgcttgctgaaccccatgatctacattttcaagaatttcgcaatttggttcgccta |
194 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||||||||||||| | |||||||||||| | | |||||||||||||| ||||| ||||||| |
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| T |
8341327 |
gttttgtactaattactacttgatatcgt-gtacaaacagtggctgctaggtgaaccccatgagatgctttttcaagaatttcaatatttgattcgcctt |
8341425 |
T |
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| Q |
195 |
gagctcattcttccctggttta |
216 |
Q |
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|||||| ||||| ||||||||| |
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| T |
8341426 |
gagctcgttctttcctggttta |
8341447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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