View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_53 (Length: 290)

Name: NF10179_low_53
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_53
NF10179_low_53
[»] chr8 (1 HSPs)
chr8 (160-280)||(19962380-19962499)
[»] chr7 (5 HSPs)
chr7 (208-280)||(1971415-1971487)
chr7 (43-130)||(37362401-37362487)
chr7 (27-111)||(1971275-1971365)
chr7 (52-105)||(7841460-7841512)
chr7 (173-213)||(1971360-1971400)
[»] chr4 (1 HSPs)
chr4 (27-126)||(41810349-41810445)
[»] chr1 (2 HSPs)
chr1 (27-126)||(31770870-31770966)
chr1 (28-106)||(7607901-7607977)
[»] chr3 (3 HSPs)
chr3 (39-126)||(52130959-52131043)
chr3 (52-105)||(53689434-53689487)
chr3 (43-106)||(52311477-52311539)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 160 - 280
Target Start/End: Original strand, 19962380 - 19962499
Alignment:
Q  160 tggtttcttgaacccttcttcatcttcctttcctcaacttcctcccctaccccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttg 259  Q
    |||||||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||    
T  19962380 tggtttcttgaacccttcttcatcatcctttcctcaccttcttcccctacccc-cgtatcaccaccatcatccatggcggcaccaactttggtcgttttg 19962478  T
Q  260 tctccgctgcaaccgtctctg 280  Q
    ||||  |||||||||||||||    
T  19962479 tctctactgcaaccgtctctg 19962499  T

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Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 208 - 280
Target Start/End: Original strand, 1971415 - 1971487
Alignment:
Q  208 accccccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 280  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1971415 accctccgtatcaccaccatcatccatggcggcatcaattttggtcgttttgtctccgctgcaaccgtctctg 1971487  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 130
Target Start/End: Complemental strand, 37362487 - 37362401
Alignment:
Q  43 tctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgattaaaca 130  Q
    ||||||||| ||||||||||||  ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  37362487 tctccatta-tttgttcaatactgatgcaaactctacagagccccatgcttccctcttcttctccctctgtcacattttgattaaaca 37362401  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 1971275 - 1971365
Alignment:
Q  27 atgttactatctcacctctccattaatt------tgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttct 111  Q
    ||||||||||||||||||||||||| ||      ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  1971275 atgttactatctcacctctccattatttatttattgttcaataccaatgcaaactctacagagccccatgcttccctcttcttctccttct 1971365  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 7841460 - 7841512
Alignment:
Q  52 atttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttct 105  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||||||||    
T  7841460 atttgttcaatacca-tgcaaactctacagaaccccatgcttccctcttcttct 7841512  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 1971360 - 1971400
Alignment:
Q  173 ccttcttcatcttcctttcctcaacttcctcccctaccccc 213  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  1971360 ccttcttcatcttcctttcctcaccttcttcccctaccccc 1971400  T

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Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 41810349 - 41810445
Alignment:
Q  27 atgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 126  Q
    |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  41810349 atgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 41810445  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 31770966 - 31770870
Alignment:
Q  27 atgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 126  Q
    |||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  31770966 atgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 31770870  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 7607977 - 7607901
Alignment:
Q  28 tgttactatctcacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctc 106  Q
    ||||| |||| |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  7607977 tgttattatcacacctctccatta--ttgttcaatacccatgcaaactctacagtgccccatgcttccctcttcttctc 7607901  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 52130959 - 52131043
Alignment:
Q  39 cacctctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctctttctgtcacattttgatta 126  Q
    |||||||||||||  |||||||||||| ||||||||| ||||| ||||||||||||||||||||||||  |||||||| |||||||||    
T  52130959 cacctctccatta--ttgttcaataccgatgcaaactctacagtgccccatgcttccctcttcttctccctctgtcac-ttttgatta 52131043  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 53689434 - 53689487
Alignment:
Q  52 atttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttct 105  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||    
T  53689434 atttgttcaataccgatgcaaactctacagagccccatgcttccctcttcttct 53689487  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 106
Target Start/End: Complemental strand, 52311539 - 52311477
Alignment:
Q  43 tctccattaatttgttcaataccaatgcaaactgtacagagccccatgcttccctcttcttctc 106  Q
    ||||||||| ||||||||||||| ||||||||| |||||||||||||| | |||||||||||||    
T  52311539 tctccatta-tttgttcaataccgatgcaaactctacagagccccatgttgccctcttcttctc 52311477  T

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