View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_57 (Length: 286)
Name: NF10179_low_57
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_57 |
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| [»] scaffold0272 (1 HSPs) |
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Alignment Details
Target: scaffold0272 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 6152 - 6426
Alignment:
| Q |
1 |
cataaaaagtgttactttcattttaaaactttcnnnnnnnagtttccttaaccggtgcccccggaacaccggttaacataaccctataagtaatgcagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6152 |
cataaaaagtgttactttcattttaaaactttctttttttagtttccttaaccggtgcccctggaacaccggttaacataaccctataagtaatgcagaa |
6251 |
T |
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| Q |
101 |
acataagaaatatacacaccatattgctacatatttaatactgaagatcgacatggaaaacatcaaatacttaaacaagatgtagagcatgtatatcccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6252 |
acataagaaatatacacaccatattgctacatatttaatactgaagatcgacatggaaaacatcaaatacttaaacaagatgtagagcatgtatatcccc |
6351 |
T |
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| Q |
201 |
acgatcgctgcttctacgtttgtaaccatgtcgttgccgctcgcctccctcttctacatagactgttgtttctct |
275 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6352 |
acgatcgctgcttctacgtttgtaaccatgtcgttgccgctcgcctccctcttctacatagactgttgtttctct |
6426 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 84
Target Start/End: Original strand, 19328867 - 19328949
Alignment:
| Q |
2 |
ataaaaagtgttactttcattttaaaactttcnnnnnnnagtttccttaaccggtgcccccggaacaccggttaacataaccc |
84 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||| |
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| T |
19328867 |
ataaaaagtgttactttcattttaaaacttcatttttttagtttccttaaccagtgcccccggggcaccggttaacatgaccc |
19328949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 31
Target Start/End: Original strand, 34663156 - 34663185
Alignment:
| Q |
2 |
ataaaaagtgttactttcattttaaaactt |
31 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34663156 |
ataaaaagtgttactttcattttaaaactt |
34663185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 84
Target Start/End: Complemental strand, 48611760 - 48611678
Alignment:
| Q |
2 |
ataaaaagtgttactttcattttaaaactttcnnnnnnnagtttccttaaccggtgcccccggaacaccggttaacataaccc |
84 |
Q |
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||||||||||||||||| ||||||||||| || ||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
48611760 |
ataaaaagtgttacttttattttaaaactatctttttttagtttccttaaccagtgccccgtagacaccggttaacatgaccc |
48611678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36603727 - 36603695
Alignment:
| Q |
1 |
cataaaaagtgttactttcattttaaaactttc |
33 |
Q |
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|||||||||||| |||||||||||||||||||| |
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| T |
36603727 |
cataaaaagtgtcactttcattttaaaactttc |
36603695 |
T |
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