View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_59 (Length: 286)
Name: NF10179_low_59
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_59 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 45865211 - 45864957
Alignment:
| Q |
18 |
atgactaggcctgaaaggcataattcttttactaggacaatattaacatctattagagtatttaatttattagtcgattttcttcattactaagttagca |
117 |
Q |
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| T |
45865211 |
atgactaggcctgaaaggcataattcttttactaggacaatattaacatctattagagtatttaatttattagtcgattttcttcattactaagttagca |
45865112 |
T |
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| Q |
118 |
ggtcgaatagttaataatatgcacatagtattaatttggggaaatatgcc-nnnnnnnttgctggtttcttcaacctatcaagatcgtgaaatttatacc |
216 |
Q |
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| T |
45865111 |
ggtcgaatagttaataatatgcacatagtattaatttggggaaatatgccaaaaaaaattgctggtttcttcaacctatcaagatcgtgaaatttatacc |
45865012 |
T |
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| Q |
217 |
attctactcatctatcaactttacactcatttcaatccacaatctcatgattctt |
271 |
Q |
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| T |
45865011 |
attctactcatctatcaactttacactcatttcaatccacaatctcatgattctt |
45864957 |
T |
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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 4052300 - 4052210
Alignment:
| Q |
182 |
tttcttcaacctatcaaga-tcgtgaaatttataccattctactcatctatcaactttacactcatttcaatccacaatctcatgattctt |
271 |
Q |
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| T |
4052300 |
tttcttcaacctatcaaaaatcgtggaacttataccgttctactcatctttcgattttgcactaatttcattacacaatctcatgattctt |
4052210 |
T |
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