View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_6 (Length: 491)

Name: NF10179_low_6
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_6
NF10179_low_6
[»] scaffold0991 (2 HSPs)
scaffold0991 (1-274)||(2397-2670)
scaffold0991 (342-476)||(2200-2334)
[»] chr1 (4 HSPs)
chr1 (1-274)||(4833423-4833696)
chr1 (1-274)||(4821624-4821897)
chr1 (342-476)||(4833759-4833893)
chr1 (342-477)||(4821964-4822099)


Alignment Details
Target: scaffold0991 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 2670 - 2397
Alignment:
Q  1 acttatccaaaaccaaatcctcttaaaccctagccaccattttctcccaattccacactaccatggcgtcgttaaatctatcctcatgcaacctctcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2670 acttatccaaaaccaaatcctcttaaaccctagccaccattttctcccaattccacactaccatggcgtcattaaatctatcctcatgcaacctctcttc 2571  T
Q  101 ctccgcttccatttcttcattcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2570 ctccgcttccatttcttcattcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatg 2471  T
Q  201 gccaaggagttgcatttcaacaaagatggttccgctatcaagaagcttcaggtgggttattcacaatcatgctc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  2470 gccaaggagttgcatttcaacaaagatggttccgctatcaagaaactccaggtgggttattcacaatcatgctc 2397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 342 - 476
Target Start/End: Complemental strand, 2334 - 2200
Alignment:
Q  342 cagaatggtgtgaacaagcttgcggatttggttggtgttactcttggtcctaaaggaaggaatgttgttcttgagagcaagtatggttctcctaagattg 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2334 cagaatggtgtgaacaagcttgcggatttggttggtgttactcttggtcctaaaggaaggaatgttgttcttgagagcaagtatggttctcctaagattg 2235  T
Q  442 ttaatgatggtgtcactgttgccaaagaggtgtgt 476  Q
    |||||||||||||||||||||||||||||||||||    
T  2234 ttaatgatggtgtcactgttgccaaagaggtgtgt 2200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 4833423 - 4833696
Alignment:
Q  1 acttatccaaaaccaaatcctcttaaaccctagccaccattttctcccaattccacactaccatggcgtcgttaaatctatcctcatgcaacctctcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4833423 acttatccaaaaccaaatcctcttaaaccctagccaccattttctcccaattccacactaccatggcgtcattaaatctatcctcatgcaacctctcttc 4833522  T
Q  101 ctccgcttccatttcttcattcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4833523 ctccgcttccatttcttcattcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatg 4833622  T
Q  201 gccaaggagttgcatttcaacaaagatggttccgctatcaagaagcttcaggtgggttattcacaatcatgctc 274  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  4833623 gccaaggagttgcatttcaacaaagatggttccgctatcaagaaactccaggtgggttattcacaatcatgctc 4833696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 4821624 - 4821897
Alignment:
Q  1 acttatccaaaaccaaatcctcttaaaccctagccaccattttctcccaattccacactaccatggcgtcgttaaatctatcctcatgcaacctctcttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4821624 acttatccaaaaccaaatcctcttaaaccctagccaccattttctcccaattccacactaccatggcgtcattaaatctatcctcatgcaacctctcttc 4821723  T
Q  101 ctccgcttccatttcttcattcccatcttcttcccgcagaaaaactaccagcaatgtcgctctaaccaggaagagtcggaaccctaaagtctcagccatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  4821724 ctccgcttccatttcttcattcccatcttcttcccgcagaaaaactaccagcaacgtcgctctaaccaggaagaatcggaaccctaaagtctcagccatg 4821823  T
Q  201 gccaaggagttgcatttcaacaaagatggttccgctatcaagaagcttcaggtgggttattcacaatcatgctc 274  Q
    |||||||||||| |||| |||||||||||||||||||||||||| || || |||||||||||||||||||||||    
T  4821824 gccaaggagttgtattttaacaaagatggttccgctatcaagaaactccaagtgggttattcacaatcatgctc 4821897  T

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Target: chr1; HSP #3
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 342 - 476
Target Start/End: Original strand, 4833759 - 4833893
Alignment:
Q  342 cagaatggtgtgaacaagcttgcggatttggttggtgttactcttggtcctaaaggaaggaatgttgttcttgagagcaagtatggttctcctaagattg 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4833759 cagaatggtgtgaacaagcttgcggatttggttggtgttactcttggtcctaaaggaaggaatgttgttcttgagagcaagtatggttctcctaagattg 4833858  T
Q  442 ttaatgatggtgtcactgttgccaaagaggtgtgt 476  Q
    |||||||||||||||||||||||||||||||||||    
T  4833859 ttaatgatggtgtcactgttgccaaagaggtgtgt 4833893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 342 - 477
Target Start/End: Original strand, 4821964 - 4822099
Alignment:
Q  342 cagaatggtgtgaacaagcttgcggatttggttggtgttactcttggtcctaaaggaaggaatgttgttcttgagagcaagtatggttctcctaagattg 441  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4821964 cagaatggtgtgaacaagcttgcggatttggttggtgttacccttggtcctaagggaaggaatgttgttcttgagagcaagtatggttctcctaagattg 4822063  T
Q  442 ttaatgatggtgtcactgttgccaaagaggtgtgtg 477  Q
    |||||||||||||||||||||| | |||||||||||    
T  4822064 ttaatgatggtgtcactgttgctagagaggtgtgtg 4822099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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