View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_61 (Length: 284)

Name: NF10179_low_61
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_61
NF10179_low_61
[»] scaffold0312 (1 HSPs)
scaffold0312 (18-284)||(10597-10863)
[»] chr1 (10 HSPs)
chr1 (18-284)||(419708-419974)
chr1 (18-284)||(975187-975453)
chr1 (90-249)||(924236-924395)
chr1 (86-284)||(960330-960531)
chr1 (67-284)||(936430-936650)
chr1 (86-284)||(942369-942570)
chr1 (90-249)||(916185-916344)
chr1 (86-284)||(949358-949559)
chr1 (86-284)||(971639-971840)
chr1 (86-237)||(909699-909850)


Alignment Details
Target: scaffold0312 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: scaffold0312
Description:

Target: scaffold0312; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 10597 - 10863
Alignment:
Q  18 acatcaagaaagggtcaaagggtgctcagattgtggagaacaccgtcgttgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatc 117  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10597 acatcaagaaagggtcaaagggtgttcagattgtgaagaacaccatcagtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatc 10696  T
Q  118 attggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaatttacaacaatataca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10697 attggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaatttacaacaatataca 10796  T
Q  218 atagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10797 atagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacc 10863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 419974 - 419708
Alignment:
Q  18 acatcaagaaagggtcaaagggtgctcagattgtggagaacaccgtcgttgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatc 117  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419974 acatcaagaaagggtcaaagggtgttcagattgtgaagaacaccatcagtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatc 419875  T
Q  118 attggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaatttacaacaatataca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419874 attggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaatttacaacaatataca 419775  T
Q  218 atagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  419774 atagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacc 419708  T

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Target: chr1; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 975187 - 975453
Alignment:
Q  18 acatcaagaaagggtcaaagggtgctcagattgtggagaacaccgtcgttgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatc 117  Q
    |||||||||||||||||||||||| |||||||||| |||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975187 acatcaagaaagggtcaaagggtgttcagattgtgaagaacaccatcagtgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatc 975286  T
Q  118 attggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaatttacaacaatataca 217  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975287 attggagtctatggttgatttcacgacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaacaaagaaagtaatttacaacaatataca 975386  T
Q  218 atagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacc 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  975387 atagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaattacc 975453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 924236 - 924395
Alignment:
Q  90 aaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaa 189  Q
    ||||||||||||||  ||||||||||||||| ||||| ||||||||||||||||||||||| ||||| || |||||||| ||||||||||||||||||||    
T  924236 aaggagaggaaaagagttgtgtaacatcattagagtcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagtgaa 924335  T
Q  190 caaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaa 249  Q
    |||||||||| || |||||||||||| |||||||   ||||| |||||||||||||||||    
T  924336 caaagaaagtgatatacaacaatatataatagcaaaaggagttaagaagttgggtgagaa 924395  T

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Target: chr1; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 960330 - 960531
Alignment:
Q  86 atcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaag 185  Q
    |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||||||| ||||||||||||||||    
T  960330 atcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcgaaactcggaaacaatgttgaagctgtttcaacagaag 960429  T
Q  186 tgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaatta 282  Q
    || | ||| | |||||   ||| |||||||||  |||||||   ||||||||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  960430 tggataaaaatagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaacaaaactattgtgtgtcacaaagagaatta 960529  T
Q  283 cc 284  Q
    ||    
T  960530 cc 960531  T

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Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 67 - 284
Target Start/End: Original strand, 936430 - 936650
Alignment:
Q  67 tgagtgtgaagagcaagggatcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgtt 166  Q
    ||||||||||||  | || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||| || |||||     
T  936430 tgagtgtgaagaaaatggcatcaaaggagaggaaaagctttgtgtaacatcattggaatctatggttgatttcactacttcgaaacttggaaacaatgtc 936529  T
Q  167 gaggctgtttcaacagaagtgaacaaagaa---agtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttg 263  Q
    || |||||||||||||||||||| ||||||   ||| | || ||| |||||  ||| |||   || |||||||| ||||| || ||||| |||||||| |    
T  936530 gaagctgtttcaacagaagtgaaaaaagaaagcagtgacttgcaagaatatgtaatggcaaaaggtgtgaagaaattgggagaaaagaataaagctgtag 936629  T
Q  264 tgtgtcacaaagagaattacc 284  Q
    ||||||||||||||| |||||    
T  936630 tgtgtcacaaagagagttacc 936650  T

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Target: chr1; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 942369 - 942570
Alignment:
Q  86 atcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaag 185  Q
    |||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || || |||||||| ||||||||||||||||    
T  942369 atcaaaggtgaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaag 942468  T
Q  186 tgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaatta 282  Q
    || | ||| | |||||   ||| |||||||||  |||||||   ||||||||||| |||||||||||||||||| || ||||||||||||||||||||||    
T  942469 tggataaaaatagtaatggtttgcaacaatatgtaatagcaaaaggagtgaagaaattgggtgagaagaacaaaactattgtgtgtcacaaagagaatta 942568  T
Q  283 cc 284  Q
    ||    
T  942569 cc 942570  T

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Target: chr1; HSP #7
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 90 - 249
Target Start/End: Original strand, 916185 - 916344
Alignment:
Q  90 aaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaagtgaa 189  Q
    ||||||||||||||  ||||||||||||||| || || ||||||||||||||||||||||| ||||| || |||||||| |||||||||||||||| |||    
T  916185 aaggagaggaaaagagttgtgtaacatcattagaatcaatggttgatttcactacttctaagcttggaaacaatgttgaagctgtttcaacagaagcgaa 916284  T
Q  190 caaagaaagtaatttacaacaatatacaatagcatctggagtgaagaagttgggtgagaa 249  Q
    |||||||||| ||  ||||||||||| |||||||   ||||| ||||||||| |||||||    
T  916285 caaagaaagtgataaacaacaatatataatagcaaaaggagttaagaagttgagtgagaa 916344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 949358 - 949559
Alignment:
Q  86 atcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaag 185  Q
    |||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||| ||| ||||| || || |||||||| ||| |||| |||||||    
T  949358 atcaaaggtgaggaaaagctttgtgtaacttcattggaatctatggttgatttcactatttcaaaactcggaaacaatgttgaagctatttccacagaag 949457  T
Q  186 tgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaatta 282  Q
    || | ||| | |||||   ||| |||||||||   ||||||   |||||||| || |||||||||||||||||| || ||||||||||||||||||||||    
T  949458 tggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaacaaaactattgtgtgtcacaaagagaatta 949557  T
Q  283 cc 284  Q
    ||    
T  949558 cc 949559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 284
Target Start/End: Original strand, 971639 - 971840
Alignment:
Q  86 atcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaag 185  Q
    |||||||| ||||||||| ||||| |||| |||||||| ||||||||||||||||| | ||| ||||| || || |||||||| ||||||||||||||||    
T  971639 atcaaaggtgaggaaaagctttgtataacttcattggaatctatggttgatttcaccatttcgaaactcggaaacaatgttgaagctgtttcaacagaag 971738  T
Q  186 tgaacaaagaaagtaa---tttacaacaatatacaatagcatctggagtgaagaagttgggtgagaagaacaaagctgttgtgtgtcacaaagagaatta 282  Q
    || | ||| | |||||   ||| |||||||||   ||||||   |||||||| || |||||||||||||||||| || ||||||||||||||||||||||    
T  971739 tggataaaaatagtaatggtttgcaacaatatgttatagcaaaaggagtgaataaattgggtgagaagaacaaaactattgtgtgtcacaaagagaatta 971838  T
Q  283 cc 284  Q
    ||    
T  971839 cc 971840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 86 - 237
Target Start/End: Original strand, 909699 - 909850
Alignment:
Q  86 atcaaaggagaggaaaaggtttgtgtaacatcattggagtctatggttgatttcactacttctaaacttggtaaaaatgttgaggctgtttcaacagaag 185  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||| |||||||||||||||  || ||||| || ||||||||  |||||||||||||||    
T  909699 atcaaaggagaggaaaagctttgtgtgacatcattggaatctatgattgatttcactactttgaagcttggaaacaatgttgacactgtttcaacagaag 909798  T
Q  186 tgaacaaagaaagtaatttacaacaatatacaatagcatctggagtgaagaa 237  Q
    | ||   |||||||  |||||||||||||  |||||||   |||||||||||    
T  909799 taaatggagaaagtggtttacaacaatatgtaatagcaaacggagtgaagaa 909850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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