View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_62 (Length: 280)
Name: NF10179_low_62
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_62 |
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| [»] scaffold1437 (1 HSPs) |
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Alignment Details
Target: scaffold1437 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: scaffold1437
Description:
Target: scaffold1437; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 1527 - 1276
Alignment:
| Q |
21 |
agccgtttcttagtgtttcaatggtgttgtattccaactaaatatgaactatacatgactttatgaaaaataattccatgtccttcaaagtgatgatcac |
120 |
Q |
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| T |
1527 |
agccgtttcttagtgtttcaatggtgttgtattccaactaaatatgaactatacatgactttatgaaaaataattccatgtccttcaaagtgatgatcac |
1428 |
T |
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| Q |
121 |
atgattattctgttgttgattctaaatcagcttaaacaagaggttatcttcttagtagtcccacttattccaaccatatacgtgcaatgcaatactaatt |
220 |
Q |
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| T |
1427 |
atgatgattctgttgttgattctaaatcagcttaaacaagaggttatctccttagcagtcctacttatttcaactatatttgtgcaatgcaatactaatt |
1328 |
T |
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| Q |
221 |
taatttttaaacgagttccatcttcaaccaccagttatgtgcatcctttgct |
272 |
Q |
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| T |
1327 |
taatttttaaacgagttccgtcttcaaccaccagttatgtgcatcctttgct |
1276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 34013531 - 34013293
Alignment:
| Q |
21 |
agccgtttcttagtgtttcaatggtgttgtattccaactaaatatgaactatacatgactttatgaaaaataattccatgtccttcaaagtgatgatcac |
120 |
Q |
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| T |
34013531 |
agccgtttcttagtgtttcaatggtgttgtagtccaactaaa-----------catgactttatgaaaaataattccatgtccttcaaagtgatgatcac |
34013443 |
T |
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| Q |
121 |
atgattattctgttgttgattctaaatcagcttaaacaagaggttatcttcttagtagtcccacttattccaaccatatacgtgcaatgcaatactaatt |
220 |
Q |
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| T |
34013442 |
atgattattctgttgttgattctaaatcagcttaaacaagaggttatctccttagcagtcccacttattccaacgatatacgtgcaatgcaatactaatt |
34013343 |
T |
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| Q |
221 |
taatttttaaacgagttccatcttcaaccaccagttatgtgcatcctttgct |
272 |
Q |
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| T |
34013342 |
taatttttaaacgagttccgtcttcaaccaccagt--tgtgcatcctttgct |
34013293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 21 - 272
Target Start/End: Complemental strand, 33150873 - 33150635
Alignment:
| Q |
21 |
agccgtttcttagtgtttcaatggtgttgtattccaactaaatatgaactatacatgactttatgaaaaataattccatgtccttcaaagtgatgatcac |
120 |
Q |
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| T |
33150873 |
agccgtttcttagtgtttcaatggtgttgtagtccaactaaa-----------catgactttatgaaaaataattccatgtccttcaaagtgatgatcac |
33150785 |
T |
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| Q |
121 |
atgattattctgttgttgattctaaatcagcttaaacaagaggttatcttcttagtagtcccacttattccaaccatatacgtgcaatgcaatactaatt |
220 |
Q |
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| T |
33150784 |
atgattattctgttgttgattctaaatcagcttaaacaagaggttatctccttagcagtcccacttattccaacgatatacgtgcaatgcaatactaatt |
33150685 |
T |
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| Q |
221 |
taatttttaaacgagttccatcttcaaccaccagttatgtgcatcctttgct |
272 |
Q |
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| T |
33150684 |
taatttttaaacgagttccgtcttcaaccaccagt--tgtgcatcctttgct |
33150635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 70 - 272
Target Start/End: Original strand, 3214590 - 3214792
Alignment:
| Q |
70 |
tatacatgactttatgaaaaataattccatgtccttcaaagtgatgatcacatgattattctgttgttgattctaaatcagcttaaacaagaggttatct |
169 |
Q |
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|||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3214590 |
tatacacgactttatgaaaaataatttcatgttcttcaaagtgatgatcacatgattattctgttgttgattctaaatcagcttaaacaagaggttatct |
3214689 |
T |
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| Q |
170 |
tcttagtagtcccacttattccaaccatatacgtgcaatgcaatactaatttaatttttaaacgagttccatcttcaaccaccagttatgtgcatccttt |
269 |
Q |
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| T |
3214690 |
ccttagcagttctacttattccaaccatatctgggcaatgcaatactaatttaatttttaaacgagttccgtcttcaaccaccagttatgtgcatccttt |
3214789 |
T |
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| Q |
270 |
gct |
272 |
Q |
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||| |
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| T |
3214790 |
gct |
3214792 |
T |
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