View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_64 (Length: 279)

Name: NF10179_low_64
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_64
NF10179_low_64
[»] chr7 (6 HSPs)
chr7 (1-263)||(36259373-36259637)
chr7 (5-167)||(36254498-36254660)
chr7 (1-174)||(36262185-36262349)
chr7 (35-167)||(46768556-46768687)
chr7 (124-153)||(18983810-18983839)
chr7 (124-153)||(18988612-18988641)
[»] chr4 (8 HSPs)
chr4 (1-237)||(19353566-19353802)
chr4 (1-237)||(19358258-19358494)
chr4 (5-220)||(19356667-19356876)
chr4 (1-124)||(19355185-19355308)
chr4 (16-173)||(19360594-19360751)
chr4 (8-163)||(35766161-35766316)
chr4 (65-174)||(11240745-11240854)
chr4 (88-174)||(11240630-11240716)
[»] chr8 (3 HSPs)
chr8 (38-167)||(29151107-29151236)
chr8 (61-114)||(26387145-26387198)
chr8 (91-137)||(43884850-43884896)
[»] chr2 (4 HSPs)
chr2 (36-167)||(2576037-2576168)
chr2 (37-167)||(2580420-2580550)
chr2 (37-167)||(2595169-2595299)
chr2 (31-167)||(2585800-2585935)
[»] chr6 (1 HSPs)
chr6 (37-143)||(30398259-30398365)


Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 36259373 - 36259637
Alignment:
Q  1 acggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatcta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36259373 acggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgagatgtgtatgcaagtcttggaaatcta 36259472  T
Q  101 taatttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtattttaataaatcgattatttatcgaggttt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36259473 taatttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtattttaataaatcgattatttatcgaggttt 36259572  T
Q  201 cagtgttgtaccattccccgttagtcgtttaagagag--cgcggtcatctcccttcccattgatc 263  Q
    || |||||||||||||||||||| |||||||||||||  |||||||||||||||||||| |||||    
T  36259573 caatgttgtaccattccccgttactcgtttaagagagaacgcggtcatctcccttcccaatgatc 36259637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 167
Target Start/End: Original strand, 36254498 - 36254660
Alignment:
Q  5 tgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataat 104  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||| ||||||||||||||||||||  | |||||||||||||||||| ||||    
T  36254498 tgttcctccccgatgaacttttcatggaagttctttcattttccgatgtgaaattccttatgcaaatgaggtgcctttgcaagtcttggaaatctctaat 36254597  T
Q  105 ttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacact 167  Q
    ||| |||||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  36254598 ttccgatcctaactttgtgaaactccacattaagcgatcagcaagaaaccctcacttgacact 36254660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 36262185 - 36262349
Alignment:
Q  1 acggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatcta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||         |||||||    
T  36262185 acggtgttcctccccgatgaacttgtcactgaagttctttcattttctgatgttaaattccttatgcaaatgaggtgtgtatgc---------aaatcta 36262275  T
Q  101 taatttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtatttt 174  Q
    ||||||| |||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36262276 taatttccgatcctatctttgtgaaactccaccttaagcgatccgcaagaaaccctcacttgacactgtatttt 36262349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 167
Target Start/End: Original strand, 46768556 - 46768687
Alignment:
Q  35 ttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccacct 134  Q
    ||||||| || ||||||||||| |  ||||||| |||||| ||||| ||||| |||||||||||||| ||||| ||||||| |||| | ||||| || ||    
T  46768556 ttctttccttctccgatgtgaaatctcttatgcgaatgagatgtgt-tgcaaatcttggaaatctattatttccgatcctatatttatcaaacttcatct 46768654  T
Q  135 taagcgatctgcaagaaaccctcacttgacact 167  Q
    || | | || ||| |||||||| ||||||||||    
T  46768655 tacgtgttccgcacgaaacccttacttgacact 46768687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 18983839 - 18983810
Alignment:
Q  124 aaactccaccttaagcgatctgcaagaaac 153  Q
    ||||||||||||||||||||||||||||||    
T  18983839 aaactccaccttaagcgatctgcaagaaac 18983810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 153
Target Start/End: Complemental strand, 18988641 - 18988612
Alignment:
Q  124 aaactccaccttaagcgatctgcaagaaac 153  Q
    ||||||||||||||||||||||||||||||    
T  18988641 aaactccaccttaagcgatctgcaagaaac 18988612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19353566 - 19353802
Alignment:
Q  1 acggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatcta 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  19353566 acggtgttcctccctgatgaacttgtcactgaagttctttcattttccgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatcta 19353665  T
Q  101 taatttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtattttaataaatcgattatttatcgaggttt 200  Q
    || ||||  ||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| | ||||||| | | |||    
T  19353666 tattttccaatcctaactttttgaaactccaccttaagcgatctgcaagataccctcacttgatactgtattttaataaatccagtatttatagggattt 19353765  T
Q  201 cagtgttgtaccattccccgttagtcgtttaagagag 237  Q
    || |||||||||||||||| ||| |||||||||||||    
T  19353766 caatgttgtaccattccccattaatcgtttaagagag 19353802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19358258 - 19358494
Alignment:
Q  1 acggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatcta 100  Q
    |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||||||| |  |||||||||||||    
T  19358258 acggtgttcctccctgatgagcttgtcactaaagttctttcgttttccgatgttaaattccttatgcaaatgaggtgtgtatggatctcttggaaatcta 19358357  T
Q  101 taatttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtattttaataaatcgattatttatcgaggttt 200  Q
    |||||||  ||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| | ||| ||  | | |||    
T  19358358 taatttccaatcctaactttgtgaaactctaccttaagcgatttgcatgaaaccctcacttgacactgtattttaataaatccagtatctagagggattt 19358457  T
Q  201 cagtgttgtaccattccccgttagtcgtttaagagag 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  19358458 cagtgttgtaccattccccgttagtcgtttaagagag 19358494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 5 - 220
Target Start/End: Original strand, 19356667 - 19356876
Alignment:
Q  5 tgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||| ||||| |||||||| ||    
T  19356667 tgttcctccccgatgaacttgtcactgaagttctttcattttccggtgttaaattccttatgcaaatgaggtgtgtatgcaattcttgaaaatctat-at 19356765  T
Q  105 ttct-gatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtattttaataaatcgattatttatcgaggtttcag 203  Q
    ||||  ||||||| ||||| |||||||      |||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | | ||||||    
T  19356766 ttctcaatcctaactttgtaaaactcc------agcgatctgcaagaaaccctcacttgacactgtattttaataaatccagtatttatagggatttcag 19356859  T
Q  204 tgttgtaccattccccg 220  Q
    ||||||| |||||||||    
T  19356860 tgttgtaacattccccg 19356876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 19355185 - 19355308
Alignment:
Q  1 acggtgttcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatcta 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  19355185 acggtgttcctccctgatgaacttgtcactgaagttctttcatttttcgatgttaaattccttatgcaaatgaggtgtgtatgcaagtcttggaaatcta 19355284  T
Q  101 taatttctgatcctaaatttgtga 124  Q
    |||||||  |||| || |||||||    
T  19355285 taatttccaatccaaactttgtga 19355308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 173
Target Start/End: Original strand, 19360594 - 19360751
Alignment:
Q  16 gatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatccta 115  Q
    ||||||||| |||||||||||||||| ||    |||||||| ||||| ||| ||||||||||| ||| |||||||||||||||| |||||||||||||||    
T  19360594 gatgaacttatcactgaagttctttccttcgttgatgtgaaattcctcatgtaaatgaggtgtttatccaagtcttggaaatctctaatttctgatccta 19360693  T
Q  116 aatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtattt 173  Q
    ||||||||||||| ||||||||| ||||  | | |||||||||  ||||||| |||||    
T  19360694 aatttgtgaaacttcaccttaagtgatcctctataaaccctcatatgacactatattt 19360751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 8 - 163
Target Start/End: Original strand, 35766161 - 35766316
Alignment:
Q  8 tcctccccgatgaacttgtcactgaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttc 107  Q
    |||||||  |||| ||| |||||||||||||||| |||||||||||||| |  ||||| |||||||  ||  | |||||||||||||| |||||||| ||    
T  35766161 tcctccctaatgatcttatcactgaagttctttccttttccgatgtgaaatctcttatccaaatgaaatgcctttgcaagtcttggaattctataatctc 35766260  T
Q  108 tgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttga 163  Q
     |||||||||||||  ||||| |||||||||||||| |||  ||||||||||||||    
T  35766261 cgatcctaaatttgccaaacttcaccttaagcgatcagcacaaaaccctcacttga 35766316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 11240745 - 11240854
Alignment:
Q  65 tgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgac 164  Q
    |||| ||||||||  ||||||||||||||||||||||||||||| ||||||||||| | ||||| |||||| || ||||   ||| ||||| ||||||||    
T  11240745 tgcacatgaggtggatatgcaagtcttggaaatctataatttctaatcctaaatttttcaaacttcaccttgagggatcgcaaaggaacccccacttgac 11240844  T
Q  165 actgtatttt 174  Q
    | ||||||||    
T  11240845 aatgtatttt 11240854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 174
Target Start/End: Complemental strand, 11240716 - 11240630
Alignment:
Q  88 tcttggaaatctataatttctgatcctaaatttgtgaaactccaccttaagcgatctgcaagaaaccctcacttgacactgtatttt 174  Q
    ||||||||||||||| |||| ||||||||||| |||||||| |||||||||| |||  |||||||   |||||| ||||||||||||    
T  11240716 tcttggaaatctatagtttcagatcctaaattcgtgaaacttcaccttaagcaatccacaagaaattttcactttacactgtatttt 11240630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 38 - 167
Target Start/End: Original strand, 29151107 - 29151236
Alignment:
Q  38 tttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccaccttaa 137  Q
    |||| |||||||||||||| |  |||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||| || ||||| ||||||||    
T  29151107 tttccttttccgatgtgaaatctcttatgcaaatgaggtgtgtatgcaaatcttggagatctatcatttctgatcctaaattcgtcaaacttcaccttaa 29151206  T
Q  138 gcgatctgcaagaaaccctcacttgacact 167  Q
    ||| || ||  |||||||| ||||||||||    
T  29151207 gcgttccgcgcgaaacccttacttgacact 29151236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 61 - 114
Target Start/End: Original strand, 26387145 - 26387198
Alignment:
Q  61 cttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcct 114  Q
    ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||    
T  26387145 cttatgcaaatgaggttcgtatgcaagtcttggaaatctatcatttctgatcct 26387198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Original strand, 43884850 - 43884896
Alignment:
Q  91 tggaaatctataatttctgatcctaaatttgtgaaactccaccttaa 137  Q
    ||||| ||||| |||||||||||||||||||| ||||| ||||||||    
T  43884850 tggaattctattatttctgatcctaaatttgttaaacttcaccttaa 43884896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 36 - 167
Target Start/End: Original strand, 2576037 - 2576168
Alignment:
Q  36 tctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccacctt 135  Q
    |||||| |||| |||||||||    ||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||  | ||||| ||||||    
T  2576037 tctttcctttttcgatgtgaaaactcttatgcgaatgaggtgtgtatgcaaatcttggaaatctattatttctgatcctaaattcattaaacttcacctt 2576136  T
Q  136 aagcgatctgcaagaaaccctcacttgacact 167  Q
    |||||||| ||| |||||||| ||||||||||    
T  2576137 aagcgatcggcacgaaacccttacttgacact 2576168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 2580420 - 2580550
Alignment:
Q  37 ctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccacctta 136  Q
    |||||||||||  ||||||| |  ||||||| |||||| || |||||||| ||||||| |||||| |||||||||||||||||| | ||||| |||||||    
T  2580420 ctttcattttctaatgtgaaatctcttatgcgaatgagatgcgtatgcaaatcttggagatctatcatttctgatcctaaatttatcaaacttcacctta 2580519  T
Q  137 agcgatctgcaagaaaccctcacttgacact 167  Q
    ||| ||| ||  |||||||| ||||||||||    
T  2580520 agcaatcggcgcgaaacccttacttgacact 2580550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 167
Target Start/End: Original strand, 2595169 - 2595299
Alignment:
Q  37 ctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccacctta 136  Q
    ||||| ||||| |||||||| |  |||||||||||||| || |||||||| |||||||||||||| |||||||||| | ||||  | ||||| |||||||    
T  2595169 ctttccttttctgatgtgaaatcacttatgcaaatgagatgcgtatgcaaatcttggaaatctattatttctgatcatgaattcatcaaacttcacctta 2595268  T
Q  137 agcgatctgcaagaaaccctcacttgacact 167  Q
    ||||||| ||  |||||||| ||||||||||    
T  2595269 agcgatcggcgcgaaacccttacttgacact 2595299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 167
Target Start/End: Original strand, 2585800 - 2585935
Alignment:
Q  31 gaagttctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactcc 130  Q
    ||||||||||| |||||||||||||| |  ||||||| |||||| ||||||||||| ||||||||||| || |||| |||| || ||||  | ||||| |    
T  2585800 gaagttctttccttttccgatgtgaaatctcttatgccaatgagatgtgtatgcaaatcttggaaatcaattatttttgattctgaattcatcaaacttc 2585899  T
Q  131 accttaagcgatctgcaagaaaccctcacttgacact 167  Q
    ||||||||||||| ||| |||| ||| ||||||||||    
T  2585900 accttaagcgatcagcacgaaa-ccttacttgacact 2585935  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 37 - 143
Target Start/End: Original strand, 30398259 - 30398365
Alignment:
Q  37 ctttcattttccgatgtgaagttccttatgcaaatgaggtgtgtatgcaagtcttggaaatctataatttctgatcctaaatttgtgaaactccacctta 136  Q
    ||||| |||||| ||||||| |  ||||||| |||| | || |||||| | |||||||||||||| |||||||| ||| |||| || ||||| |||||||    
T  30398259 ctttccttttccaatgtgaaatctcttatgctaatgcgatgagtatgccaatcttggaaatctattatttctgaacctgaattcgtcaaacttcacctta 30398358  T
Q  137 agcgatc 143  Q
    |||||||    
T  30398359 agcgatc 30398365  T

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