View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_68 (Length: 276)
Name: NF10179_low_68
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 260
Target Start/End: Original strand, 6361330 - 6361572
Alignment:
| Q |
16 |
gatgtttcaactgtgaattgaattaatgaatctaaagacctggtattttgttattttgtcctctgcgatcattaatgaagctggaatattggagagaagc |
115 |
Q |
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| T |
6361330 |
gatgtttcaactgtgaattgaattaatgaatctaaagacctggtattttgttattttgtcctctgcagtcattaatgaagctggaatattggaga--agc |
6361427 |
T |
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| Q |
116 |
tttagaatactacaaattgaccataccattctataaaagtatgtcatattgaaacttcttctatcaataatgatgcaataataagtttctttcatgtatt |
215 |
Q |
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| T |
6361428 |
attagaatactgtaaattgaccataccattctataaaagtatgtcatattgaaacttcttctatcaataatgatgcaataataagtttccttcatgtatt |
6361527 |
T |
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| Q |
216 |
tgctaannnnnnnnnnnncttgattgaattaaaaaatgaaaattc |
260 |
Q |
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| T |
6361528 |
tgctaatttttcttttttcttgattgaattaaaaaatgaaaattc |
6361572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 18725120 - 18725171
Alignment:
| Q |
68 |
attttgtcctctgcgatcattaatgaagctggaatattggagagaagcttta |
119 |
Q |
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| T |
18725120 |
attttgtcctctgcagtcattaatgaagctggaacattagagagaagattta |
18725171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 159
Target Start/End: Complemental strand, 32856747 - 32856663
Alignment:
| Q |
75 |
cctctgcgatcattaatgaagctggaatattggagagaagctttagaatactacaaattgaccataccattctataaaagtatgt |
159 |
Q |
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| T |
32856747 |
cctctgcagtcattaatgaagctggaatattggagagaagctttagcatattgcaaattgaccataccaatatatcaaagtatgt |
32856663 |
T |
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