View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10179_low_69 (Length: 275)
Name: NF10179_low_69
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_69 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 29)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 9838758 - 9839017
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838758 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
9838857 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9838858 |
acccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaa |
9838957 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
9838958 |
ccaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttgatgtcc |
9839017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 9849636 - 9849895
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849636 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
9849735 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9849736 |
acccttgcccaacttgtttacaatgatgaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtctgaggattttgatattttgagagtaa |
9849835 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
9849836 |
ccaagtctctccttgaatcggtcacttccataacatgggatagcaataatcttgatgtcc |
9849895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 2 - 260
Target Start/End: Complemental strand, 10376016 - 10375758
Alignment:
| Q |
2 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||| || |||||||||||||||||||| | | ||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10376016 |
aaagacactataatgaacatgttgctatcagagacagacacatcgcataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
10375917 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375916 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
10375817 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10375816 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
10375758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10126825 - 10127084
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10126825 |
caaagagacaataatgaacatgttgctatctcagagagacacatcccataataatataggtgttgttgcaattttgggcatgggaggtttgggaaaaact |
10126924 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10126925 |
acccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaa |
10127024 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
| ||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
10127025 |
caaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttgatgtcc |
10127084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 11769131 - 11769386
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11769131 |
caaagagacaataatgaacatgttgctatcacagagagacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
11769230 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
11769231 |
acccttgctcaacttgtctacaatgataaagaagttcaacaatattttgatttgaaggcatgggcttgcgtgtctgaggattttgatattatgagagtaa |
11769330 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11769331 |
ccaggtctctccttgaatcggtcacttcaagaacttgggatagcaataatcttgat |
11769386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10663423 - 10663682
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10663423 |
caaagagacaataatgaacatgttgctatcacagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
10663522 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10663523 |
acccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaa |
10663622 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
| ||||||||||||||||| |||||||| | ||| ||||||||||| |||||||||||| |
|
|
| T |
10663623 |
caaagtctctccttgaatctgtcacttccacaacttgggatagcaaagatcttgatgtcc |
10663682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10434216 - 10433957
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| ||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10434216 |
caaagagacaataatgaacatgttgctatcacagagaaacacaactcataataagataggtgttgttgcaattttaggcatgggaggtttaggaaaaact |
10434117 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
10434116 |
acccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcctgggcttgtgtgtctcaggattttgatattttgaaagtaa |
10434017 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
10434016 |
ccaagtctctccttgaatcggtcacttccagaacttgggatagcaataatcttgatgtcc |
10433957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10031900 - 10032159
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10031900 |
caaagagacaataatgaacatgttgctatcacagagagacgcatcccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
10031999 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10032000 |
acccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcctgggcttgtgtgtctgaggattttgatattatgagagtaa |
10032099 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
| ||||||||||||||||| |||||||| | ||| | ||||||||| |||||||||||| |
|
|
| T |
10032100 |
caaagtctctccttgaatctgtcacttccacaacttcggatagcaaagatcttgatgtcc |
10032159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10184139 - 10184398
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10184139 |
caaagagacaataatgaacatgttgctgtcacagagagacacaacccataatgctataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
10184238 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
10184239 |
acccttgctcaacttgtttacaatgataaagaagttcaacaacattttgatatgagggcgtgggcttgtgtgtccgaggattttgatattatgagagtaa |
10184338 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||| |
|
|
| T |
10184339 |
ccaagtctctccttgaatctgtcacttccacaacttgggatagcaataatcttgatgtcc |
10184398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 10260595 - 10260849
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |||||| | || |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10260595 |
caaagagacaataatgaacatgttgctatcacagagagaaacaaccaacaataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
10260694 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10260695 |
acccttgctcaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggcttgtgtgtctgaggattttgatattatgagagtaa |
10260794 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttga |
255 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| ||||||| |||||||||||| |
|
|
| T |
10260795 |
ccaagtctctccttgaatcagtcacttctagaaattgggatatcaataatcttga |
10260849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10580498 - 10580757
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||| |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580498 |
caaagagacaataatgaacatgttgctatcacagagaaacacaatccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
10580597 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10580598 |
acccttgcccaacttgtttacaatgataaagaagttcaacaacattttgacatgaaggcgtgggtttgtgtgtctgaggattttgatattatgagagtaa |
10580697 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
| ||||||||||||||||| |||||||| | ||| | ||| ||||||||||||||||||| |
|
|
| T |
10580698 |
caaagtctctccttgaatctgtcacttccacaacttcggaaagcaataatcttgatgtcc |
10580757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 10363970 - 10363711
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
||||||||||||||||||||||||||| || | ||||| |||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
10363970 |
caaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaact |
10363871 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||| |
|
|
| T |
10363870 |
acccttgcccaacttgtttacaatgataaagaagttcaacaacattttgatttgaaggcatgggtttgtgtctctgaggattttgatattatgagagtaa |
10363771 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
| ||||||||||||||||| | |||||| | ||| | ||| ||||||||||||||||||| |
|
|
| T |
10363770 |
caaagtctctccttgaatctgccacttccataacttcggaaagcaataatcttgatgtcc |
10363711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10088688 - 10088946
Alignment:
| Q |
2 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| |||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10088688 |
aaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaacta |
10088787 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10088788 |
cccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaac |
10088887 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| | |||||||||| |||||| ||||| |
|
|
| T |
10088888 |
aaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttggtgtcc |
10088946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 260
Target Start/End: Original strand, 10195571 - 10195829
Alignment:
| Q |
2 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
|||||||||||||||||||||||||| || | ||||| |||||| | || ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10195571 |
aaagagacaataatgaacatgttgctttcaaagagagaaacaaccgacaataatataggtgttgttgcaattttaggcatgggaggtttaggaaaaacta |
10195670 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10195671 |
cccttgcccaacttgtttacaatgataaagaagttcaacaccattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaac |
10195770 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
||||||||||||||||| |||||||| | ||| | |||||||||| |||||| ||||| |
|
|
| T |
10195771 |
aaagtctctccttgaatctgtcacttcgacaacttcggatagcaatgatcttggtgtcc |
10195829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 10077166 - 10077425
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | | | ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10077166 |
caaagagacaataatgaacatgttgctatcagggatgggcggaacccataataagataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
10077265 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||||| | | |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10077266 |
acccttgcccaacttgtttacaatgattataaagttcgataccattttgatttgcaggcatgggcttgtgtgtctgaggattttgatattatgagagtaa |
10077365 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||| ||||||| |||| |||||||||||| |
|
|
| T |
10077366 |
ccaagtctctccttgaatcgatcacttctagaacttgggataacaatgatcttgatgtcc |
10077425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11131198 - 11130943
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | || ||| | | |||||||||| ||||||||||||||||| || ||||||||| | |||||||| |
|
|
| T |
11131198 |
caaagagacaataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaaca |
11131099 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |||| |||||| | || |||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
11131098 |
acccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaa |
11130999 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
| || ||||||||||||| ||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
11130998 |
ctaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttgat |
11130943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 11149026 - 11148771
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| | || ||| | | |||||||||| ||||||||||||||||| || ||||||||| | |||||||| |
|
|
| T |
11149026 |
caaagagataataacgaacatgttgctatcaaagagcagcactagcaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggaaaaaca |
11148927 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||| |||| |||||| | || |||||||||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
11148926 |
acccttgcacaaattgcttacaatgatgaaaaagttcaagaacactttgatctcaaagcatgggcttgtgtatcggaggattttgatattttaagagtaa |
11148827 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
| || ||||||||||||| ||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
11148826 |
ctaaaactctccttgaatctgtcacttcaagggcttgggaaaacaataatcttgat |
11148771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 256
Target Start/End: Complemental strand, 11160188 - 11159934
Alignment:
| Q |
2 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| | ||||||||||||| |||||||||||||| || ||||||||| | || ||||| | |
|
|
| T |
11160188 |
aaagagacaataatgaacatgttgctatcagagagtagcactggcaataacaatataggcgttgttgcaattttaggtatgggaggtgtcggtaaaacga |
11160089 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
| ||||||||||||||||||||| |||||||||||||| | ||||||||||| || |||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
11160088 |
cacttgcacaacttgtttacaataatgaaaaagttcaagatcattttgatttcaaagcatgggcttgtgtatctgaggattttgatattttatctgtaac |
11159989 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
|| |||| |||||||| |||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
11159988 |
taaaactcttcttgaatctgtcacttcaagagcttgggaaaccaataatcttgat |
11159934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 2 - 252
Target Start/End: Original strand, 10889204 - 10889454
Alignment:
| Q |
2 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||||||||||||||||||||||||||| | || ||| | |||||||||| ||||||||||||||||| || ||||||||| | || ||||| | |
|
|
| T |
10889204 |
aaagagacaataatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacga |
10889303 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| | || |||||| | || |||||||||||||| |||||||||||||||||||| | ||||| |
|
|
| T |
10889304 |
cacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatctgaggattttgatattttaactgtaac |
10889403 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatct |
252 |
Q |
| |
|
|| |||| |||||||| || ||||||||| | ||||| | ||||||||| |
|
|
| T |
10889404 |
taaaactcttcttgaatctgtgacttcaagagcttgggaaaacaataatct |
10889454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 8861184 - 8861438
Alignment:
| Q |
2 |
aaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaacta |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||| | || ||| | |||||||||| ||||||||||||||||| || ||||||||| | || ||||| | |
|
|
| T |
8861184 |
aaagagacagtaatgaacatgttgctatcagagagcagcactaggaataacaatatcggtgttgttgcaattttaggtatgggaggtgtcggtaaaacga |
8861283 |
T |
|
| Q |
102 |
cccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| | || |||||| | || |||||||||||||| || |||||||||||||||| | ||||| |
|
|
| T |
8861284 |
cacttgcacaacttgtttacaatgatgaaaaagttcaagagcactttgatctcaaagcatgggcttgtgtatcagaggattttgatatttcaactgtaac |
8861383 |
T |
|
| Q |
202 |
caagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgat |
256 |
Q |
| |
|
|| |||| |||||||| |||||||||||| | ||||| | ||||||||||||| |
|
|
| T |
8861384 |
taaaactcttcttgaatctgtcacttcaagagcttgggaaaacaataatcttgat |
8861438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 10527281 - 10527452
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||| ||||||||| | || ||||| |||||||||||||||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
10527281 |
ataataatttaggtgttgttgcaatcttgggtatgggaggtgtcggtaaaacaacccttgcacaacttgtttacaatgatgaaaaggttgaacaccattt |
10527380 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| | ||||| |||| || ||| || |||||||| ||| || |||||||||||||||||||| ||||||| |
|
|
| T |
10527381 |
tgatctcaaggcctgggtttatgtatcagaggatttcgatgttgtgagagtaaccaagtctctcattgaatc |
10527452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 10517408 - 10517579
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||| ||||||||| ||||||| |||| |||||||| | || ||||| ||||||||||| ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
10517408 |
ataataatttaggtgttgctgcaattgtgggtatgggaggcgtcggtaaaacgacccttgcacagtttgtttacaatgatgcaaaagttgaacaacattt |
10517507 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||||| || || |||| |||||| ||||||||||||||| || | |||| |||||||||| |||||||||| |
|
|
| T |
10517508 |
tgatttcaaagcctgggtttgtgtatctgaggattttgatgttattagagcaaccaagtctatccttgaatc |
10517579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 11782128 - 11781957
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||| |||||||||| ||||||||||| |||||||| | || ||||| ||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
11782128 |
ataataatttaggtgttgtcgcaattttgggtatgggaggcgtcggtaaaacgacccttgcacagcttgtttacaatgatgtgaaagttgaacaacattt |
11782029 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||||| || | |||| |||||| || |||||||| ||| || | ||| |||||||||||||||||||||| |
|
|
| T |
11782028 |
tgatttcaaagtctgggtttgtgtatcggaggatttcgatgttgttagaataaccaagtctctccttgaatc |
11781957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 10500500 - 10500671
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||| |||||||||||||||||||||| |||||||| | || ||||| || ||||| |||||||||||||| || || ||| || || ||||||| |
|
|
| T |
10500500 |
ataataatttaggtgttgttgcaattttgggtatgggaggcgtcggtaaaacaacacttgctcaacttgtttacaacgacgataaaattgaagaacattt |
10500599 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||||| ||| || ||||| ||||||| |||||||||||||| |
|
|
| T |
10500600 |
tgatctgaaggcatggatttgtgtaccggaggatttcgatgttgtgagaataaccaaatctctccttgaatc |
10500671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13160935 - 13161077
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13160935 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13161034 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13161035 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13161077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13170986 - 13171128
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13170986 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13171085 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13171086 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13171128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13289620 - 13289762
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13289620 |
ggtgtggtcgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13289719 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| ||||||||||||||||| |
|
|
| T |
13289720 |
tctgggtttgtgtatcggaggatttcgatattttgagagtaac |
13289762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Original strand, 13332859 - 13333001
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13332859 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13332958 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
13332959 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
13333001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 198
Target Start/End: Original strand, 13344044 - 13344183
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
13344044 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
13344143 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagt |
198 |
Q |
| |
|
|||| |||||| || |||||||| |||||| ||||||| |
|
|
| T |
13344144 |
tctgggtttgtgtatcggaggatttcgatattctgagagt |
13344183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 26906794 - 26907053
Alignment:
| Q |
1 |
caaagagacaataatgaacatgttgctatctcaaagagacacaacccataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26906794 |
caaagagacaataatgaatatgttgctatcagagagagacacaacccataataatataggtgttgttgcaattttgggcatgggaggtttaggaaaaact |
26906893 |
T |
|
| Q |
101 |
acccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaa |
200 |
Q |
| |
|
|||||||| |||||| ||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26906894 |
acccttgcccaacttctttacaatgataaagaagttcaacggcattttgatttgaaggcatgggtttgtgtgtctgaggattttgatattatgagagtaa |
26906993 |
T |
|
| Q |
201 |
ccaagtctctccttgaatcggtcacttcaagaacatgggatagcaataatcttgatgtcc |
260 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||| |
|
|
| T |
26906994 |
ccaaatctctccttgaatcggtcacttccagaacttgggataccaataatcttgatgtcc |
26907053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 48 - 219
Target Start/End: Complemental strand, 17853069 - 17852898
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||||||| |||||||||||||||| ||||| ||||||||| | || ||||| ||||||||||| |||||||||||||||||||| ||| |||| ||||| |
|
|
| T |
17853069 |
ataacaatttaggtgttgttgcaatattggggatgggaggtgtcggtaaaacgacccttgcacagcttgtttacaatgatgaaaaggttgaacatcattt |
17852970 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| | || || |||| |||||| || || ||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
17852969 |
tgatctcaaagcctgggtttgtgtatcagaagattttgatgttgtgagagtaaccaagtctctccttgaatc |
17852898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 187
Target Start/End: Complemental strand, 7129044 - 7128961
Alignment:
| Q |
104 |
cttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggcatgggcttgtgtgtctgaggattttgat |
187 |
Q |
| |
|
||||| |||||||| |||||||| || |||| |||||||||||||| ||||| ||||| |||||| ||||| ||||||||| |
|
|
| T |
7129044 |
cttgctcaacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctgatgattttgat |
7128961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 48 - 219
Target Start/End: Original strand, 11484961 - 11485132
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||||| | || ||||| ||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
11484961 |
ataataatttaggtgttgttgcaattttggttatgggaggcgtcggtaaaacgacccttgcacaacttgtttacaacgatgaaaaagttgaacagcattt |
11485060 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatc |
219 |
Q |
| |
|
|||| | || ||||||| |||||| || |||||||| ||| | |||| |||||||||| ||||||||||| |
|
|
| T |
11485061 |
tgatctcaaagcatgggtttgtgtatcggaggatttcgatgtcgtgaggataaccaagtccctccttgaatc |
11485132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 44957834 - 44957664
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||| ||||||||||||| | || || ||||||||| | || ||||| || || ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
44957834 |
ataataatttaggtgttgttgccaccttaggtatgggaggtgtcggtaaaacgactctcgcacaacttgtttacaatgatataaaagttgaacaacattt |
44957735 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaat |
218 |
Q |
| |
|
||| | || |||||| ||||| || |||||||| || || | ||| |||| |||||||| ||||||| |
|
|
| T |
44957734 |
cgatctcaaagcatggatatgtgtatcagaggatttcaatgttgttagaataacaaagtctcttcttgaat |
44957664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 29836587 - 29836795
Alignment:
| Q |
48 |
ataacaatataggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattt |
147 |
Q |
| |
|
|||| ||||||||||| || |||||| |||||||||||| | || ||||| ||||| || | |||| | ||||| | ||| ||||| || | ||||| |
|
|
| T |
29836587 |
ataataatataggtgtagtcgcaattacaggcatgggaggtatcggtaaaacgaccctcgctcgacttatatacaaccaggaagaagttaaaaatcattt |
29836686 |
T |
|
| Q |
148 |
tgatttgaaggcatgggcttgtgtgtctgaggattttgatattttgagagtaaccaagtctctccttgaatcggtcacttcaagaacatgggatagcaat |
247 |
Q |
| |
|
|||| | | | |||| |||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||||| |||| ||| |||| |
|
|
| T |
29836687 |
tgatgtacaagtctgggtttgtgtgtctgaagattttgatatgttgagagtaaccaaatctctccttgaagttgtcacttcaagagaatggaataccaat |
29836786 |
T |
|
| Q |
248 |
aatcttgat |
256 |
Q |
| |
|
|| |||||| |
|
|
| T |
29836787 |
aaccttgat |
29836795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 136002 - 135860
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
136002 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
135903 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
135902 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
135860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 201
Target Start/End: Complemental strand, 146053 - 145911
Alignment:
| Q |
59 |
ggtgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaagg |
158 |
Q |
| |
|
||||| |||||||||||||| ||||| ||| | || ||||| || ||||| |||||| |||| |||||| || |||||||| | ||||||||| |||| | |
|
|
| T |
146053 |
ggtgtggttgcaattttgggtatgggcggtgttggcaaaaccactcttgcccaacttctttataatgataaagaagttcaagaccattttgatctgaaag |
145954 |
T |
|
| Q |
159 |
catgggcttgtgtgtctgaggattttgatattttgagagtaac |
201 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||||||| |
|
|
| T |
145953 |
tctgggtttgtgtatcggaggatttcgatattctgagagtaac |
145911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 61 - 203
Target Start/End: Complemental strand, 31679845 - 31679703
Alignment:
| Q |
61 |
tgttgttgcaattttgggcatgggaggtttaggaaaaactacccttgcacaacttgtttacaatgatgaaaaagttcaacaacattttgatttgaaggca |
160 |
Q |
| |
|
||||||| ||||||| |||||||||||| | || ||||| |||| || |||||| ||||||||||| || | |||||| ||| ||||||| | || || |
|
|
| T |
31679845 |
tgttgtttcaattttcggcatgggaggtgtcggtaaaacagccctagctcaacttctttacaatgataaagatgttcaagaacgttttgatgtaaaagct |
31679746 |
T |
|
| Q |
161 |
tgggcttgtgtgtctgaggattttgatattttgagagtaacca |
203 |
Q |
| |
|
|||| |||| |||| || || |||||| ||||||| ||||||| |
|
|
| T |
31679745 |
tgggtttgtctgtccgaagagtttgatgttttgagggtaacca |
31679703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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