View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_7 (Length: 477)

Name: NF10179_low_7
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_7
NF10179_low_7
[»] chr4 (39 HSPs)
chr4 (180-460)||(2547159-2547439)
chr4 (1-182)||(2546806-2546987)
chr4 (244-376)||(5035301-5035433)
chr4 (227-294)||(2546806-2546873)
chr4 (242-377)||(2621399-2621534)
chr4 (242-376)||(2533990-2534124)
chr4 (243-367)||(2381637-2381761)
chr4 (242-365)||(2518910-2519033)
chr4 (236-376)||(2490799-2490939)
chr4 (244-367)||(2391265-2391388)
chr4 (238-377)||(2471729-2471868)
chr4 (1-68)||(2547206-2547273)
chr4 (242-376)||(2467219-2467356)
chr4 (242-369)||(2393837-2393963)
chr4 (242-294)||(5106633-5106685)
chr4 (243-294)||(2367982-2368033)
chr4 (242-341)||(2525432-2525531)
chr4 (244-346)||(12124524-12124626)
chr4 (244-294)||(2373548-2373598)
chr4 (243-369)||(2380371-2380497)
chr4 (320-376)||(2486062-2486118)
chr4 (20-68)||(2621482-2621530)
chr4 (242-281)||(2363167-2363206)
chr4 (314-369)||(2382745-2382800)
chr4 (312-367)||(2482527-2482582)
chr4 (242-281)||(2625591-2625630)
chr4 (20-75)||(5106626-5106681)
chr4 (307-377)||(2361199-2361269)
chr4 (20-70)||(2367980-2368030)
chr4 (20-70)||(2518914-2518964)
chr4 (20-69)||(2391337-2391386)
chr4 (12-69)||(2471729-2471786)
chr4 (331-376)||(2477352-2477397)
chr4 (20-69)||(5035303-5035352)
chr4 (20-92)||(2381686-2381758)
chr4 (242-294)||(2460283-2460335)
chr4 (21-69)||(2467224-2467272)
chr4 (125-176)||(2546682-2546734)
chr4 (311-343)||(12126647-12126679)
[»] chr8 (1 HSPs)
chr8 (243-277)||(18314729-18314763)
[»] chr5 (1 HSPs)
chr5 (243-281)||(28673360-28673398)
[»] chr7 (2 HSPs)
chr7 (310-378)||(10169040-10169108)
chr7 (310-378)||(10176565-10176633)


Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 180 - 460
Target Start/End: Original strand, 2547159 - 2547439
Alignment:
Q  180 cacaaaatcactgctactaaaaatagctatagaacggtagggagcgtattcttccattagggtgagttcttcgagtaaagggaaacaatcagcaatgaag 279  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  2547159 cacaaaatcactgctactaaaaatagctatagaacggtggggagtgtattcttccattagggtgagttcttcaagtaaagggaaacaatcagcaatgaag 2547258  T
Q  280 aataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatga 379  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547259 aataaatcattcttgctgataaaggtgattttggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatga 2547358  T
Q  380 tggtacggttggagagatagagtgatttgacgtttatagggagagtggagattagggtaagaagtgtgttaaggtcaatgt 460  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547359 tggtactgttggagagatagagtgatttgacgtttatagggagagtggagattagggtaagaagtgtgttaaggtcaatgt 2547439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 2546806 - 2546987
Alignment:
Q  1 attcttccatcagggtgaattcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtgtacacaagtaatctcagaacaattgagagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546806 attcttccatcagggtgaattcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttgtgtacacaagtaatctcagaacaattgagagt 2546905  T
Q  101 cgggaaattcttcaaagaagtgaacatataaacaaatattagggattttgggaagtgtcaagaatcgatcatcatctatcac 182  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2546906 cgggaaattcttcaaataagttaacatataaacaaatattagggattttgggaagtgtcaagaatcgatcatcatctatcac 2546987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 244 - 376
Target Start/End: Original strand, 5035301 - 5035433
Alignment:
Q  244 agttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatct 343  Q
    |||||||||||||||||||||||||||||||| ||||| | |||||||||| |||||||  | ||||   |||||  ||||||||| ||| |||||||||    
T  5035301 agttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgttgataaatctcatttgataacaagcgagagacgttaaacttttcatct 5035400  T
Q  344 tttcagacaaagctcgcaacccatttgcaggaa 376  Q
    | || ||||||||||||||| ||||| ||||||    
T  5035401 tctcggacaaagctcgcaactcattttcaggaa 5035433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 2546806 - 2546873
Alignment:
Q  227 attcttccattagggtgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttg 294  Q
    |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2546806 attcttccatcagggtgaattcttcgagtaaaggaaaacaatcagcaatgaagaataaatcattcttg 2546873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 242 - 377
Target Start/End: Complemental strand, 2621534 - 2621399
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcat 341  Q
    ||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||     | |||  | ||||| ||||||| ||||||||||||||    
T  2621534 tgagttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttgcggattttattaattcggtaacaagtgagagatgtcaaatttttcat 2621435  T
Q  342 cttttcagacaaagctcgcaacccatttgcaggaat 377  Q
     ||||  || |||||||||||||||| || ||||||    
T  2621434 atttttggagaaagctcgcaacccatctgtaggaat 2621399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 2533990 - 2534124
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcat 341  Q
    |||||||||| ||||||||||||||||||||||| ||||| | |||||||||| ||||| || | ||||   ||||| ||||||| || |||||||||||    
T  2533990 tgagttcttcaagtaaagggaaacaatcagcaatcaagaagagatcattcttgttgatatagctcatttgataacaagtgagagatgttaaatttttcat 2534089  T
Q  342 cttttcagacaaagctcgcaacccatttgcaggaa 376  Q
    ||| |  ||||||||||| ||| ||||| ||||||    
T  2534090 cttcttggacaaagctcggaactcattttcaggaa 2534124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 243 - 367
Target Start/End: Complemental strand, 2381761 - 2381637
Alignment:
Q  243 gagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatc 342  Q
    ||||||||||||||||||||| |||||  ||||||| || ||||| |||||| ||||  | || ||||| |||||| | ||||| |||||||||||||||    
T  2381761 gagttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaagtaagagaggtcaaatttttcatc 2381662  T
Q  343 ttttcagacaaagctcgcaacccat 367  Q
    ||||  ||||||||||| |||||||    
T  2381661 tttttggacaaagctcggaacccat 2381637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 365
Target Start/End: Original strand, 2518910 - 2519033
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcat 341  Q
    ||||||||| |||||||||||||||||||||||||||||| | ||||||||||  |||| |  | ||||   ||||| ||||| | ||||||||||||||    
T  2518910 tgagttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtggatatatttcatttaataacaagtgagatatgtcaaatttttcat 2519009  T
Q  342 cttttcagacaaagctcgcaaccc 365  Q
     |||| |||||||||| |||||||    
T  2519010 gttttgagacaaagcttgcaaccc 2519033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 236 - 376
Target Start/End: Original strand, 2490799 - 2490939
Alignment:
Q  236 ttagggtgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatt 335  Q
    ||||| ||||||| |||||||||||||||||||||||||| || || | |||||||||| |||||||  | |||    ||||| ||||||| ||||||||    
T  2490799 ttaggatgagttcgtcgagtaaagggaaacaatcagcaataaaaaagagatcattcttgttgataaacctcattcgataacaagtgagagatgtcaaatt 2490898  T
Q  336 tttcatcttttcagacaaagctcgcaacccatttgcaggaa 376  Q
    ||||||| |  | ||||||||||||||  ||||||| ||||    
T  2490899 tttcatcgtcccggacaaagctcgcaattcatttgcgggaa 2490939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 244 - 367
Target Start/End: Complemental strand, 2391388 - 2391265
Alignment:
Q  244 agttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatct 343  Q
    |||||||||||||||||||| |||||| |||||||||| | ||| |||||| ||||  |    | |||||||||| | ||||| ||||||||||||||||    
T  2391388 agttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgttgatccaaaaaaattcggaacaagtaagagaggtcaaatttttcatct 2391289  T
Q  344 tttcagacaaagctcgcaacccat 367  Q
    |||  ||||||||||| |||||||    
T  2391288 ttttggacaaagctcggaacccat 2391265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 238 - 377
Target Start/End: Original strand, 2471729 - 2471868
Alignment:
Q  238 agggtgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttt 337  Q
    ||||||||||||||||||||||| ||||||||||| || ||||| | || |||||||  |||| |  | | || ||||||| | ||||| ||||| || |    
T  2471729 agggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgtcgatataattaactttggaacaatttagagatgtcaatttct 2471828  T
Q  338 tcatcttttcagacaaagctcgcaacccatttgcaggaat 377  Q
    ||||||||||||||| ||||||||| |||| | |||||||    
T  2471829 tcatcttttcagacagagctcgcaatccatcttcaggaat 2471868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 2547206 - 2547273
Alignment:
Q  1 attcttccatcagggtgaattcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttg 68  Q
    |||||||||| ||||||| |||||| |||||||| ||||||||| |||||||||||||||||||||||    
T  2547206 attcttccattagggtgagttcttcaagtaaagggaaacaatcagcaatgaagaataaatcattcttg 2547273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 376
Target Start/End: Original strand, 2467219 - 2467356
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgat---aaaggtgatttcggaacaaatgagagacgtcaaattttt 338  Q
    |||| ||||||||||||||||||||||||||||||||||| | ||| ||||||  |||   ||| |  |||  | ||||| |||| || |||||||||||    
T  2467219 tgagctcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgtcgatatcaaaagcaattcggtaacaagtgagtgatgtcaaattttt 2467318  T
Q  339 catcttttcagacaaagctcgcaacccatttgcaggaa 376  Q
    ||||| ||  || |||||||||||||||| ||||||||    
T  2467319 catctctttggagaaagctcgcaacccatctgcaggaa 2467356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 369
Target Start/End: Complemental strand, 2393963 - 2393837
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaa-tttttca 340  Q
    ||||||||| ||||||||||||| ||||||||||||| || | | ||||||||| |||||  || ||||  ||  |  ||||||| |||||| |||||||    
T  2393963 tgagttcttggagtaaagggaaaaaatcagcaatgaaaaagagaccattcttgcagataatagtcattttaga--atgtgagagatgtcaaattttttca 2393866  T
Q  341 tcttttcagacaaagctcgcaacccattt 369  Q
    ||||||  |||||||||||||||||||||    
T  2393865 tcttttgggacaaagctcgcaacccattt 2393837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 242 - 294
Target Start/End: Complemental strand, 5106685 - 5106633
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttg 294  Q
    |||||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  5106685 tgagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 5106633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 294
Target Start/End: Complemental strand, 2368033 - 2367982
Alignment:
Q  243 gagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttg 294  Q
    ||||||||||||||||||||||||||||||||||||||| | |||| |||||    
T  2368033 gagttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttg 2367982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 242 - 341
Target Start/End: Original strand, 2525432 - 2525531
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcat 341  Q
    ||||||||||||||| |||||||||||||||||||||||  | |||||||||| | |||||  | | ||   ||||| ||||||| ||||||||||||||    
T  2525432 tgagttcttcgagtagagggaaacaatcagcaatgaagagcagatcattcttgttaataaatctcagttgataacaagtgagagatgtcaaatttttcat 2525531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 244 - 346
Target Start/End: Original strand, 12124524 - 12124626
Alignment:
Q  244 agttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatct 343  Q
    |||||||| ||||||||||||||||||||||||||||| | |||| ||||    ||| |  | |||  ||||||| ||||||| ||||||||||||||||    
T  12124524 agttcttctagtaaagggaaacaatcagcaatgaagaagagatcactctttagcatacaaatcattctggaacaagtgagagaggtcaaatttttcatct 12124623  T
Q  344 ttt 346  Q
    |||    
T  12124624 ttt 12124626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 294
Target Start/End: Complemental strand, 2373598 - 2373548
Alignment:
Q  244 agttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttg 294  Q
    ||||||||||| |||||||||||||||||||||||||| | |||| |||||    
T  2373598 agttcttcgagcaaagggaaacaatcagcaatgaagaagagatcactcttg 2373548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 369
Target Start/End: Complemental strand, 2380497 - 2380371
Alignment:
Q  243 gagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttgctgataaaggtgatttcggaacaaatgagagacgtcaaatttttcatc 342  Q
    |||| |||| ||| ||||||| ||||||||||||||| | | ||| |||||  ||||  | || |||| | |||| |||| ||| |||||||||||||||    
T  2380497 gagtacttcaagtgaagggaagcaatcagcaatgaagtaaatatccttcttattgatccaagtaattttgaaacacatgaaagaagtcaaatttttcatc 2380398  T
Q  343 ttttcagacaaagctcgcaacccattt 369  Q
    ||||  ||||||| |||||| ||||||    
T  2380397 tttttggacaaaggtcgcaatccattt 2380371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 320 - 376
Target Start/End: Original strand, 2486062 - 2486118
Alignment:
Q  320 tgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaa 376  Q
    ||||||| |||||||||||||||||||  |||||||||||||   ||||||||||||    
T  2486062 tgagagatgtcaaatttttcatctttttggacaaagctcgcagagcatttgcaggaa 2486118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 2621530 - 2621482
Alignment:
Q  20 ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttg 68  Q
    ||||||||||||||| ||||||||| ||| |||||||| ||||||||||    
T  2621530 ttcttcgagtaaagggaaacaatcagcaaggaagaatagatcattcttg 2621482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 2363206 - 2363167
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaa 281  Q
    ||||||| ||||| ||||||||||||||||||||||||||    
T  2363206 tgagttcgtcgaggaaagggaaacaatcagcaatgaagaa 2363167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 2382800 - 2382745
Alignment:
Q  314 aacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccattt 369  Q
    ||||||||| ||| ||||| |||||||||||||  |||||||||||||| ||||||    
T  2382800 aacaaatgaaagaagtcaattttttcatctttttggacaaagctcgcaatccattt 2382745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 367
Target Start/End: Original strand, 2482527 - 2482582
Alignment:
Q  312 ggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccat 367  Q
    ||||||| ||||||| ||||||||||||||||||| ||| | ||||| ||||||||    
T  2482527 ggaacaagtgagagatgtcaaatttttcatctttttagatagagctctcaacccat 2482582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 281
Target Start/End: Complemental strand, 2625630 - 2625591
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaa 281  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  2625630 tgagttcttcgagtaaagggaaacaatcaacaataaagaa 2625591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 5106681 - 5106626
Alignment:
Q  20 ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtgtacac 75  Q
    ||||||||||||||| ||||||||| |||||||||| | |||| |||||| |||||    
T  5106681 ttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtctacac 5106626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 377
Target Start/End: Complemental strand, 2361269 - 2361199
Alignment:
Q  307 atttcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaat 377  Q
    |||| ||||||| ||||||| |||||||||||||| ||||  ||||||||||| | |||| ||| ||||||    
T  2361269 attttggaacaagtgagagatgtcaaatttttcatttttttggacaaagctcgtagcccacttgtaggaat 2361199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 2368030 - 2367980
Alignment:
Q  20 ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtg 70  Q
    ||||||||||||||| ||||||||| |||||||||| | |||| |||||||    
T  2368030 ttcttcgagtaaagggaaacaatcagcaatgaagaagagatcactcttgtg 2367980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 2518914 - 2518964
Alignment:
Q  20 ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtg 70  Q
    ||||| ||||||||| ||||||||| |||||||||| | ||||||||||||    
T  2518914 ttctttgagtaaagggaaacaatcagcaatgaagaagagatcattcttgtg 2518964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 2391386 - 2391337
Alignment:
Q  20 ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt 69  Q
    ||||||||||||||| || ||||||||||||||||| | ||| |||||||    
T  2391386 ttcttcgagtaaagggaagcaatcaacaatgaagaagatatccttcttgt 2391337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 2471729 - 2471786
Alignment:
Q  12 agggtgaattcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt 69  Q
    ||||||| ||||||||||||||||||||||||| | || ||||| | || ||||||||    
T  2471729 agggtgagttcttcgagtaaaggaaaacaatcagctatcaagaagagatgattcttgt 2471786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 376
Target Start/End: Original strand, 2477352 - 2477397
Alignment:
Q  331 aaatttttcatcttttcagacaaagctcgcaacccatttgcaggaa 376  Q
    ||||||||||||||||  |||||||||| |||||||||| ||||||    
T  2477352 aaatttttcatcttttttgacaaagctctcaacccatttacaggaa 2477397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 5035303 - 5035352
Alignment:
Q  20 ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt 69  Q
    ||||||||||||||| ||||||||| |||| ||||| | |||||||||||    
T  5035303 ttcttcgagtaaagggaaacaatcagcaatcaagaaaagatcattcttgt 5035352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2381758 - 2381686
Alignment:
Q  20 ttcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgtgtacacaagtaatctcagaacaa 92  Q
    ||||||||||||||| || ||||| |||||||| || ||||| |||||||  |  |||||||| |||||||||    
T  2381758 ttcttcgagtaaagggaagcaatcgacaatgaataagaaatccttcttgttgatccaagtaatttcagaacaa 2381686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 294
Target Start/End: Original strand, 2460283 - 2460335
Alignment:
Q  242 tgagttcttcgagtaaagggaaacaatcagcaatgaagaataaatcattcttg 294  Q
    |||||||||||||||| || |||||||||||||| ||||| | || |||||||    
T  2460283 tgagttcttcgagtaatggaaaacaatcagcaattaagaagagatgattcttg 2460335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 2467224 - 2467272
Alignment:
Q  21 tcttcgagtaaaggaaaacaatcaacaatgaagaataaatcattcttgt 69  Q
    |||||||||||||| ||||||||| |||||||||| | ||| |||||||    
T  2467224 tcttcgagtaaagggaaacaatcagcaatgaagaaaagatcgttcttgt 2467272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 176
Target Start/End: Original strand, 2546682 - 2546734
Alignment:
Q  125 catataaacaaatatta-gggattttgggaagtgtcaagaatcgatcatcatc 176  Q
    |||||||||||||  || |||||||||||||||  ||||||||||||||||||    
T  2546682 catataaacaaatgctacgggattttgggaagtaccaagaatcgatcatcatc 2546734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 12126647 - 12126679
Alignment:
Q  311 cggaacaaatgagagacgtcaaatttttcatct 343  Q
    |||||||||||||||| ||||||||||||||||    
T  12126647 cggaacaaatgagagaggtcaaatttttcatct 12126679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 277
Target Start/End: Complemental strand, 18314763 - 18314729
Alignment:
Q  243 gagttcttcgagtaaagggaaacaatcagcaatga 277  Q
    |||||||||||| ||||||||||||||||||||||    
T  18314763 gagttcttcgagcaaagggaaacaatcagcaatga 18314729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 281
Target Start/End: Complemental strand, 28673398 - 28673360
Alignment:
Q  243 gagttcttcgagtaaagggaaacaatcagcaatgaagaa 281  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  28673398 gagttcttcgagcaaagggaagcaatcagcaatgaagaa 28673360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 10169108 - 10169040
Alignment:
Q  310 tcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatg 378  Q
    ||||||||| ||||||| |||||| || | || |||| ||| ||| |||||||||||||||| ||||||    
T  10169108 tcggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatg 10169040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 10176633 - 10176565
Alignment:
Q  310 tcggaacaaatgagagacgtcaaatttttcatcttttcagacaaagctcgcaacccatttgcaggaatg 378  Q
    ||||||||| ||||||| |||||| || | || |||| ||| ||| |||||||||||||||| ||||||    
T  10176633 tcggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgcgggaatg 10176565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University