View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_70 (Length: 275)

Name: NF10179_low_70
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_70
NF10179_low_70
[»] chr5 (2 HSPs)
chr5 (19-268)||(12845448-12845693)
chr5 (224-264)||(32267531-32267571)
[»] chr3 (2 HSPs)
chr3 (157-211)||(51120949-51121003)
chr3 (80-140)||(37580947-37581007)
[»] chr4 (3 HSPs)
chr4 (157-207)||(12123430-12123480)
chr4 (224-264)||(1519145-1519185)
chr4 (224-264)||(7307916-7307956)
[»] chr8 (2 HSPs)
chr8 (224-264)||(17636404-17636444)
chr8 (224-264)||(27922564-27922604)
[»] chr1 (1 HSPs)
chr1 (224-264)||(52082637-52082677)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 12845448 - 12845693
Alignment:
Q  19 gaaagtacaatctcggaaacaacattaccagccacattttgacaatccctcaaattgattgatctctctcagctttctgcatttttctactacttgcctc 118  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    |||||||||| |||| |||||||| |||| |||||||||    
T  12845448 gaaagtaccatctcagaaacaacattaccagccacattttgacaatccctcaaattg----atctctctcaactttgtgcattttgctaccacttgcctc 12845543  T
Q  119 actatcttctctgtaacatcataaccactttccaggtccaattgcaatagaccacgacaactctttgagattgcatatagtgcttcatcatcagtcacgg 218  Q
    |||  ||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||    
T  12845544 actcccttctctgtaacatcattacaattttccaggtccaattgcaatagaccacaacaactctttgagattgcatatagtgcttcatcatcggtcgcgg 12845643  T
Q  219 accgggacaagttcaatacctctaatttggaaacttcaaagttcatctca 268  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12845644 accgggacaagttcaatacctctaatttgggaacttcaaggttcatctca 12845693  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 32267531 - 32267571
Alignment:
Q  224 gacaagttcaatacctctaatttggaaacttcaaagttcat 264  Q
    ||||||||||||||||| ||||||| |||||||||||||||    
T  32267531 gacaagttcaatacctccaatttgggaacttcaaagttcat 32267571  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Complemental strand, 51121003 - 51120949
Alignment:
Q  157 caattgcaatagaccacgacaactctttgagattgcatatagtgcttcatcatca 211  Q
    ||||||||| || ||||||||||||||||||||| ||||||||  ||||||||||    
T  51121003 caattgcaaaagcccacgacaactctttgagattacatatagtttttcatcatca 51120949  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 37581007 - 37580947
Alignment:
Q  80 atctctctcagctttctgcatttttctactacttgcctcactatcttctctgtaacatcat 140  Q
    ||||||||||| | | ||||||||||||||||| | ||||||  ||||||||| |||||||    
T  37581007 atctctctcaggtgtatgcatttttctactactagtctcactcccttctctgtgacatcat 37580947  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 207
Target Start/End: Complemental strand, 12123480 - 12123430
Alignment:
Q  157 caattgcaatagaccacgacaactctttgagattgcatatagtgcttcatc 207  Q
    ||||||||| || ||||||||||| |||| ||||||||| |||||||||||    
T  12123480 caattgcaaaagcccacgacaactttttgggattgcataaagtgcttcatc 12123430  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 1519185 - 1519145
Alignment:
Q  224 gacaagttcaatacctctaatttggaaacttcaaagttcat 264  Q
    ||||||||||| ||||||| ||||| |||||||||||||||    
T  1519185 gacaagttcaacacctctagtttgggaacttcaaagttcat 1519145  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 7307916 - 7307956
Alignment:
Q  224 gacaagttcaatacctctaatttggaaacttcaaagttcat 264  Q
    ||||||||||||||||| ||||||| ||||| |||||||||    
T  7307916 gacaagttcaatacctccaatttgggaactttaaagttcat 7307956  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Complemental strand, 17636444 - 17636404
Alignment:
Q  224 gacaagttcaatacctctaatttggaaacttcaaagttcat 264  Q
    ||||||||||| ||||| ||||||| |||||||||||||||    
T  17636444 gacaagttcaacacctccaatttgggaacttcaaagttcat 17636404  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 27922564 - 27922604
Alignment:
Q  224 gacaagttcaatacctctaatttggaaacttcaaagttcat 264  Q
    ||||||||||| ||||| ||||||| |||||||||||||||    
T  27922564 gacaagttcaacacctccaatttgggaacttcaaagttcat 27922604  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 52082637 - 52082677
Alignment:
Q  224 gacaagttcaatacctctaatttggaaacttcaaagttcat 264  Q
    ||||||||||| ||||| ||||||||||||| |||||||||    
T  52082637 gacaagttcaacacctccaatttggaaacttgaaagttcat 52082677  T

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