View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_71 (Length: 271)
Name: NF10179_low_71
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 10290336 - 10290210
Alignment:
| Q |
17 |
gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt |
116 |
Q |
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| T |
10290336 |
gacatcaaaatgctccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt |
10290237 |
T |
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| Q |
117 |
ctgcataagaattcgttcatatttatt |
143 |
Q |
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| T |
10290236 |
ctgcataagaattcgttcatatttatt |
10290210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 150 - 252
Target Start/End: Complemental strand, 10290155 - 10290053
Alignment:
| Q |
150 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
249 |
Q |
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| T |
10290155 |
tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact |
10290056 |
T |
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| Q |
250 |
aca |
252 |
Q |
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||| |
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| T |
10290055 |
aca |
10290053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 10298736 - 10298669
Alignment:
| Q |
17 |
gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
84 |
Q |
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| T |
10298736 |
gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc |
10298669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 9747055 - 9747171
Alignment:
| Q |
27 |
tggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataaga |
126 |
Q |
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| T |
9747055 |
tggtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaaga |
9747154 |
T |
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| Q |
127 |
attcgttcatatttatt |
143 |
Q |
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| T |
9747155 |
attcgttcatacttatt |
9747171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 9747370 - 9747457
Alignment:
| Q |
162 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca |
252 |
Q |
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| T |
9747370 |
ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaactaca |
9747457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 143
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
| Q |
85 |
ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt |
143 |
Q |
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| T |
10298525 |
ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt |
10298467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 153 - 252
Target Start/End: Complemental strand, 10298270 - 10298174
Alignment:
| Q |
153 |
tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca |
252 |
Q |
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| T |
10298270 |
tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaactaca |
10298174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Original strand, 37743885 - 37743974
Alignment:
| Q |
162 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca |
252 |
Q |
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| T |
37743885 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactaca |
37743974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 34694519 - 34694430
Alignment:
| Q |
162 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca |
252 |
Q |
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| T |
34694519 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactaca |
34694430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 34716931 - 34716842
Alignment:
| Q |
162 |
ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaactaca |
252 |
Q |
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| T |
34716931 |
ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaactaca |
34716842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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