View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_76 (Length: 262)
Name: NF10179_low_76
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_76 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 262
Target Start/End: Complemental strand, 34556886 - 34556643
Alignment:
| Q |
19 |
tgattgtggcaagttatgttatttaatatttgtaatgtggcaaatataaaggtcttaaacgagattagcagacttgtggagctatataagaatgaagaaa |
118 |
Q |
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| T |
34556886 |
tgattttggcaagttatgttatttaatatttgtaatgtggcaattataaaggtcttaaacgagattagcagacttgtggagctatataagaatgaagaaa |
34556787 |
T |
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| Q |
119 |
ttagcataactgtaacgggacacagcttgggtggtgcacttgcaactataagctctatggatatagttgctaataaattcaacataccaagagggcaacc |
218 |
Q |
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| T |
34556786 |
ttagcataactgtaacgggacacagcttgggtggtgcacttgcaactataagctctatggatatagttgctaataaattcaacataccaaaagggcaacc |
34556687 |
T |
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| Q |
219 |
tcaaaaaacatgtccagtcacattatttgcctttgcttctcctc |
262 |
Q |
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| T |
34556686 |
tcaaaaaacatgtccagtcacattatttgcatttggttcacctc |
34556643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 42 - 253
Target Start/End: Complemental strand, 34548370 - 34548159
Alignment:
| Q |
42 |
taatatttgtaatgtggcaaatataaaggtcttaaacgagattagcagacttgtggagctatataagaatgaagaaattagcataactgtaacgggacac |
141 |
Q |
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|||||||||||||||| ||||||| |||||| | |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
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| T |
34548370 |
taatatttgtaatgtgacaaatattaaggtcctgaacgagatcagcagacttgtggagctatacaagaatgaagaaattagcataactgtaactggacac |
34548271 |
T |
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| Q |
142 |
agcttgggtggtgcacttgcaactataagctctatggatatagttgctaataaattcaacataccaagagggcaacctcaaaaaacatgtccagtcacat |
241 |
Q |
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| T |
34548270 |
agtttgggtggtgcacttgcaactataagttcagtggatatagttgctaataaattcaacatgccaaaagagcaacctcaaaaagcatgtccagttacaa |
34548171 |
T |
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| Q |
242 |
tatttgcctttg |
253 |
Q |
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| T |
34548170 |
catttgcatttg |
34548159 |
T |
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