View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_80 (Length: 254)

Name: NF10179_low_80
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_80
NF10179_low_80
[»] chr3 (8 HSPs)
chr3 (111-245)||(28926385-28926519)
chr3 (1-89)||(28926311-28926399)
chr3 (160-240)||(28917171-28917251)
chr3 (119-240)||(28903360-28903481)
chr3 (160-240)||(28936637-28936717)
chr3 (160-237)||(28893397-28893474)
chr3 (1-76)||(28935856-28935931)
chr3 (12-76)||(28892727-28892791)


Alignment Details
Target: chr3 (Bit Score: 106; Significance: 4e-53; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 111 - 245
Target Start/End: Original strand, 28926385 - 28926519
Alignment:
Q  111 ggtttctgtttcttttgctggacataatataaggcatgattgnnnnnnntatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28926385 ggtttctgtttcttttgctggacataatataaggcatgattgaaaaaaacatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgca 28926484  T
Q  211 agttttgagcagtgcctacaaaatcctttgcttct 245  Q
    |||||||||||||||||||||||||||||| ||||    
T  28926485 agttttgagcagtgcctacaaaatcctttgtttct 28926519  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 28926311 - 28926399
Alignment:
Q  1 tatctatcttctcctgcaaatgaaaaagcacataattacaagatatacagagaaagggaaaatttttacagcctggtttctgtttcttt 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28926311 tatctatcttctcctgcaaatgaaaaagcacataattacaagatatacagagaaagggaaaatttatacagcctggtttctgtttcttt 28926399  T

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Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 28917171 - 28917251
Alignment:
Q  160 tatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttg 240  Q
    ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28917171 tatctaaccccatcagaatcaatgtcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttg 28917251  T

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Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 28903360 - 28903481
Alignment:
Q  119 tttcttttgctggacataatataaggcatgattgnnnnnnntatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttga 218  Q
    |||||||||||| |||||||||||||| |||||         |||| |||||||||||||| || ||||||||| ||||||||||||| |||||||||||    
T  28903360 tttcttttgctgcacataatataaggcgtgattaaaaaaaaaatcttaccccatcagaatctacgtcagcatttttctcaattagaaaggcaagttttga 28903459  T
Q  219 gcagtgcctacaaaatcctttg 240  Q
    ||||||||||||||||||||||    
T  28903460 gcagtgcctacaaaatcctttg 28903481  T

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Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 160 - 240
Target Start/End: Original strand, 28936637 - 28936717
Alignment:
Q  160 tatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcctttg 240  Q
    ||||| ||||||||||||||||| |||||||||  |||||||||||||||||||||||||||||||| |||||||||||||    
T  28936637 tatcttaccccatcagaatcaacctcagcattttcctcaattagaaatgcaagttttgagcagtgcccacaaaatcctttg 28936717  T

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Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 160 - 237
Target Start/End: Original strand, 28893397 - 28893474
Alignment:
Q  160 tatctcaccccatcagaatcaacatcagcatttgtctcaattagaaatgcaagttttgagcagtgcctacaaaatcct 237  Q
    ||||| |||||||||||||| |||||| ||||| ||||||||| | | ||||||||||||||||||||||||||||||    
T  28893397 tatcttaccccatcagaatcgacatcaacatttttctcaattaaataggcaagttttgagcagtgcctacaaaatcct 28893474  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 28935856 - 28935931
Alignment:
Q  1 tatctatcttctcctgcaaatgaaaaagcacataattacaagatatacagagaaagggaaaatttttacagcctgg 76  Q
    |||||||||| ||||| |||||||||||||  |||||| ||||||||  ||||||| |||||||| ||| ||||||    
T  28935856 tatctatcttttcctgaaaatgaaaaagcatgtaattataagatatatggagaaagagaaaatttataccgcctgg 28935931  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 28892727 - 28892791
Alignment:
Q  12 tcctgcaaatgaaaaagcacataattacaagatatacagagaaagggaaaatttttacagcctgg 76  Q
    ||||||||||||||||||||||||| | ||| ||||  || |||| | |||||| ||||||||||    
T  28892727 tcctgcaaatgaaaaagcacataatgataaggtatatggataaagaggaaatttatacagcctgg 28892791  T

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