View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_81 (Length: 253)

Name: NF10179_low_81
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_81
NF10179_low_81
[»] chr4 (15 HSPs)
chr4 (1-207)||(12717875-12718077)
chr4 (1-205)||(11197136-11197336)
chr4 (26-206)||(10396351-10396527)
chr4 (1-146)||(34946214-34946359)
chr4 (46-167)||(47680575-47680695)
chr4 (26-117)||(2917272-2917363)
chr4 (10-110)||(47680831-47680932)
chr4 (10-137)||(47681075-47681205)
chr4 (81-149)||(48635145-48635213)
chr4 (82-149)||(53468097-53468164)
chr4 (81-157)||(11196922-11196998)
chr4 (32-132)||(11307696-11307796)
chr4 (80-169)||(10396120-10396207)
chr4 (27-101)||(32864613-32864687)
chr4 (87-132)||(16559303-16559348)
[»] chr7 (11 HSPs)
chr7 (1-205)||(21416189-21416389)
chr7 (1-202)||(27597893-27598092)
chr7 (6-59)||(23568901-23568954)
chr7 (12-124)||(8802413-8802526)
chr7 (10-149)||(23578104-23578243)
chr7 (19-117)||(11776196-11776294)
chr7 (88-149)||(2463442-2463503)
chr7 (82-117)||(21416563-21416598)
chr7 (91-149)||(11776447-11776505)
chr7 (87-149)||(27597696-27597757)
chr7 (47-127)||(2463112-2463193)
[»] chr3 (11 HSPs)
chr3 (1-168)||(16143346-16143513)
chr3 (1-167)||(40195904-40196069)
chr3 (19-110)||(16869651-16869744)
chr3 (28-149)||(43978675-43978796)
chr3 (10-98)||(32201242-32201330)
chr3 (13-137)||(23162107-23162231)
chr3 (1-110)||(32200948-32201058)
chr3 (19-131)||(54017666-54017779)
chr3 (81-205)||(53595950-53596070)
chr3 (81-205)||(53596265-53596385)
chr3 (89-169)||(16871041-16871119)
[»] chr6 (5 HSPs)
chr6 (1-149)||(7301400-7301548)
chr6 (11-169)||(11637803-11637959)
chr6 (89-205)||(21130105-21130217)
chr6 (89-169)||(22605337-22605415)
chr6 (13-85)||(15092272-15092344)
[»] chr5 (12 HSPs)
chr5 (1-199)||(13112903-13113096)
chr5 (1-199)||(13042907-13043100)
chr5 (1-169)||(13042450-13042615)
chr5 (1-141)||(36389102-36389239)
chr5 (1-205)||(13112448-13112647)
chr5 (12-168)||(14168854-14169009)
chr5 (51-157)||(13042672-13042776)
chr5 (51-157)||(13112670-13112774)
chr5 (12-117)||(41341376-41341482)
chr5 (89-132)||(34103552-34103595)
chr5 (88-203)||(13112245-13112356)
chr5 (87-132)||(33036258-33036303)
[»] chr1 (7 HSPs)
chr1 (1-132)||(31973452-31973583)
chr1 (1-128)||(34665930-34666057)
chr1 (26-70)||(47159161-47159205)
chr1 (80-149)||(12466272-12466341)
chr1 (89-149)||(25294887-25294947)
chr1 (88-167)||(27686608-27686685)
chr1 (26-108)||(43834430-43834512)
[»] chr8 (6 HSPs)
chr8 (12-149)||(5981542-5981680)
chr8 (1-167)||(2954309-2954473)
chr8 (1-54)||(3671046-3671099)
chr8 (1-100)||(23753048-23753146)
chr8 (89-169)||(5981815-5981893)
chr8 (89-138)||(12156769-12156818)
[»] chr2 (5 HSPs)
chr2 (26-137)||(11727758-11727869)
chr2 (81-205)||(28226327-28226447)
chr2 (5-169)||(28226571-28226731)
chr2 (26-101)||(44981910-44981986)
chr2 (79-149)||(13792594-13792664)
[»] scaffold0548 (1 HSPs)
scaffold0548 (32-132)||(4186-4286)
[»] scaffold0160 (1 HSPs)
scaffold0160 (93-167)||(27532-27604)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 12718077 - 12717875
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  12718077 taggcttgctgggggagtgggagcaggatcctagtatggatcatcctagtgatgtgggttagtcacacttgaggaggaaattgttagaaatcaagtgtga 12717978  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaagagt 200  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||| |||||||| |  | | ||||||||||||||||||||    
T  12717977 gagataatgttccacattgattagaaatggagcaaacgttgaatatatata--agaggaaacctataaaaattc--agtcttagggttttgggtaagagt 12717882  T
Q  201 gtggtca 207  Q
    |||||||    
T  12717881 gtggtca 12717875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 11197136 - 11197336
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||   | | ||||||| ||| |||||||||    
T  11197136 taggcttgctgggggagtgggagcgggatcctggtgtggatcatcctagtgatgtgggtgagtaacacttgattgggagattgttaaaaaccaagtgtga 11197235  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaagagt 200  Q
    | |||||||   ||||| || ||||||||||| |||| |||   ||||||||||||||| ||||||  ||| ||||    ||||||||||||||||||||    
T  11197236 gtgattatgcctcacatcgactagaaatggaggaaacgttg--gatatataagagaggagacccat--aaacccattgccttagggttttgggtaagagt 11197331  T
Q  201 gtggt 205  Q
    |||||    
T  11197332 gtggt 11197336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 26 - 206
Target Start/End: Original strand, 10396351 - 10396527
Alignment:
Q  26 ggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattaga 125  Q
    |||||||||||||||||||||||||||||||||  ||||| |||||||| | | |||||| ||||||||||||||| ||||||||  || ||||| ||||    
T  10396351 ggatcctagtgtggatcatcctagtgatgtgggcgagtcatacttgagggggagattgttggaaatcaagtgtgagtgattatgtctcatattgactaga 10396450  T
Q  126 aatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaagagtgtggtc 206  Q
    ||||||| |||  |||   ||||||||||||||| ||||||  ||| ||||    |||||||||||| |||||||||||||    
T  10396451 aatggaggaaatgttg--gatatataagagaggagacccat--aaacccattgccttagggttttggataagagtgtggtc 10396527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 34946359 - 34946214
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||| |||||||||||||||||   ||||| |||| ||||||||||||||||||||||| |||||||||||||  | | |||||| ||||||||||||||    
T  34946359 taggtttgctgggggagtgggactgggatcatagtttggatcatcctagtgatgtgggtgagtcacacttgagagggagattgttggaaatcaagtgtga 34946260  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatat 146  Q
    | ||| |||| ||||||  | | |||||||||||||| ||||||||    
T  34946259 gtgataatgtcccacatcaacttgaaatggagcaaacgttgaatat 34946214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 47680575 - 47680695
Alignment:
Q  46 ctagtgatgtgggttagtcacacttgaggagaaaattgttagaaa-tcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaat 144  Q
    |||||||| ||||| | |||||||||||| ||| |||||| |||| | ||||||||| |||||||| |||||| ||||| |||||||| |||||||||||    
T  47680575 ctagtgatatgggtgactcacacttgaggggaagattgttggaaaattaagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaat 47680674  T
Q  145 atatataagagaggaaacccata 167  Q
    ||||||  ||||||| |||||||    
T  47680675 atatat--gagaggagacccata 47680695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 2917363 - 2917272
Alignment:
Q  26 ggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacat 117  Q
    |||||| ||||||||| | ||||||||||||||| |||||||||||||| ||| |||||| ||||||||  ||||| ||| |||| ||||||    
T  2917363 ggatccaagtgtggattagcctagtgatgtgggtgagtcacacttgaggggaagattgttggaaatcaatcgtgagtgataatgtcccacat 2917272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 47680831 - 47680932
Alignment:
Q  10 tgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattat 108  Q
    |||||||| |||||  ||||||||||| ||||||  |||||||||||||| | |||||||||||| | | ||||||  ||||||||||||||| ||||||    
T  47680831 tgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactcacacttgagggggagattgttgggaaatcaagtgtgagtgattat 47680930  T
Q  109 gt 110  Q
    ||    
T  47680931 gt 47680932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 47681075 - 47681205
Alignment:
Q  10 tgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagt--cacacttgaggagaaaattgttag-aaatcaagtgtgagagatt 106  Q
    |||||||| |||||  ||||||||||| ||||||  |||||||||||||| | |  ||||||||||| | | |||||| | |||| ||||||||| ||||    
T  47681075 tgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactaacacacttgagggggagattgttgggaaataaagtgtgagtgatt 47681174  T
Q  107 atgttccacattgattagaaatggagcaaac 137  Q
    |||| || ||| |||||||||||||| ||||    
T  47681175 atgtcccgcatcgattagaaatggaggaaac 47681205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 48635213 - 48635145
Alignment:
Q  81 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    ||||||||  ||||||||||| |||||||| |||||||||||| |||||||| ||| |||||| |||||    
T  48635213 ttgttagatttcaagtgtgagtgattatgtcccacattgattataaatggaggaaatattgaacatata 48635145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 53468164 - 53468097
Alignment:
Q  82 tgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    |||| ||||||||||||||| ||| ||||  ||||| ||||||||||||||||||  |||||||||||    
T  53468164 tgttggaaatcaagtgtgagtgataatgtctcacatcgattagaaatggagcaaatgttgaatatata 53468097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 11196922 - 11196998
Alignment:
Q  81 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagag 157  Q
    |||||||||||||||  ||||  ||||||| ||||||  | ||||||||||| |||| ||| |||||||||||||||    
T  11196922 ttgttagaaatcaagcttgagtaattatgtcccacatcaactagaaatggaggaaacgttggatatatataagagag 11196998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 11307796 - 11307696
Alignment:
Q  32 tagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatgga 131  Q
    ||||||||||||  |||||||||||| | | ||||| |||||| ||| ||||| |||||| ||||||||| |||| |||  ||||| || || |||||||    
T  11307796 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgtcagaaattaagtgtgagtgattgtgtctcacatcgactataaatgga 11307697  T
Q  132 g 132  Q
    |    
T  11307696 g 11307696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 10396120 - 10396207
Alignment:
Q  80 attgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 169  Q
    |||||| ||||||||||||||| ||||||||  ||||| ||  |||||||||| |||  ||||  ||||||||||||| | |||||||||    
T  10396120 attgttggaaatcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaatgttga--atatataagagagaagacccataaa 10396207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 32864613 - 32864687
Alignment:
Q  27 gatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgag 101  Q
    |||||||||||||||||  |||| ||||||| | | ||||| |||||| |||||||||| |||  ||||||||||    
T  32864613 gatcctagtgtggatcagactagcgatgtggatgactcacaattgaggggaaaattgttggaatgcaagtgtgag 32864687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 16559303 - 16559348
Alignment:
Q  87 gaaatcaagtgtgagagattatgttccacattgattagaaatggag 132  Q
    ||||||||||||||| ||||||||| ||||| |||||| |||||||    
T  16559303 gaaatcaagtgtgagcgattatgttacacatcgattaggaatggag 16559348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 21416389 - 21416189
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||| |||| ||||||||||||    
T  21416389 taggcttgctgggggagtgggagcgggatcctagtgtggatcatcctagtgatgtgggtgagtcacacttcagggggaaatttttaggaatcaagtgtga 21416290  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaagagt 200  Q
    | |||||||| ||||||  | |||| ||||| |||| ||||   ||||||||||||||| ||||||  ||| ||||    ||||||||||||||||||||    
T  21416289 gtgattatgtcccacatcaactagacatggaacaaaaattg--gatatataagagaggagacccat--aaacccattgccttagggttttgggtaagagt 21416194  T
Q  201 gtggt 205  Q
    |||||    
T  21416193 gtggt 21416189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 27597893 - 27598092
Alignment:
Q  1 taggcttgctgggggagtgggagcagg--atcctagtgtggatcatcctagtgatgtgggttagtcacacttga-ggagaaaattgttagaaatcaagtg 97  Q
    |||||||||||||||||||||||| ||  | |||||||||||||||||||||||||||||| |||||||||||| ||||| | | ||| |||||||||||    
T  27597893 taggcttgctgggggagtgggagcgggggaccctagtgtggatcatcctagtgatgtgggtgagtcacacttgaaggagaga-tcgttggaaatcaagtg 27597991  T
Q  98 tgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaag 197  Q
    |||| ||| ||||  ||||| || || |||| |||||||| ||| |||||||  |||||||| |||||||||   ||||  | ||||||||||| |||||    
T  27597992 tgagtgataatgtctcacatcgactataaattgagcaaacgttggatatata--agagaggagacccataaac--ccattgtcttagggttttgcgtaag 27598087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 23568954 - 23568901
Alignment:
Q  6 ttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggt 59  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23568954 ttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggt 23568901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 8802413 - 8802526
Alignment:
Q  12 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattatgt 110  Q
    |||||| |||||| |||||||||| |||||||  |||||||||||| | | ||||||||||||  || ||||||  | |||| |||||||| ||||||||    
T  8802413 ggggagcgggagcgggatcctagtatggatcaggctagtgatgtggctgattcacacttgagggaaagattgttgggtaatctagtgtgagtgattatgt 8802512  T
Q  111 tccacattgattag 124  Q
     |||||| ||||||    
T  8802513 cccacatcgattag 8802526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 23578243 - 23578104
Alignment:
Q  10 tgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatg 109  Q
    ||||| ||||||||| ||||||||| ||| ||||  |||||||| ||||| | ||| |||||||| | | |||||| |   ||| ||||||| ||||| |    
T  23578243 tggggtagtgggagcgggatcctagcgtgaatcaggctagtgatatgggtcactcaaacttgaggcggagattgttgggtttcatgtgtgagtgattaag 23578144  T
Q  110 ttccacattgattagaaatggagcaaacattgaatatata 149  Q
    | |||||| || ||||||||||| |||| ||| |||||||    
T  23578143 tcccacatcgagtagaaatggagaaaacgttggatatata 23578104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 11776294 - 11776196
Alignment:
Q  19 gggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacat 117  Q
    |||||| ||||||||| ||||||||  |||||||||||||| | ||| |||||||| | | |||||| | | ||||||||||  |||||||| ||||||    
T  11776294 gggagcgggatcctagcgtggatcaggctagtgatgtgggtgactcatacttgagggggagattgttgggattcaagtgtgaatgattatgtcccacat 11776196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 2463442 - 2463503
Alignment:
Q  88 aaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    ||||||||||||||  ||||||| |||||||| |||||||||||| ||| |||| |||||||    
T  2463442 aaatcaagtgtgagtaattatgtcccacattggttagaaatggaggaaatattggatatata 2463503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 21416598 - 21416563
Alignment:
Q  82 tgttagaaatcaagtgtgagagattatgttccacat 117  Q
    |||||||||||||||||||| |||||||||||||||    
T  21416598 tgttagaaatcaagtgtgagtgattatgttccacat 21416563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 11776505 - 11776447
Alignment:
Q  91 tcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    ||||||||||| |||||||| ||||||  | ||| ||||||| ||||||||||||||||    
T  11776505 tcaagtgtgagtgattatgtcccacatcaactaggaatggaggaaacattgaatatata 11776447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 27597696 - 27597757
Alignment:
Q  87 gaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    ||||| ||||||||| ||| || |||||||| ||||||||||||||||||| ||| |||||||    
T  27597696 gaaattaagtgtgagtgat-atattccacatcgattagaaatggagcaaacgttggatatata 27597757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 2463112 - 2463193
Alignment:
Q  47 tagtgatgtgggttagtcacacttgaggagaaaattgttag-aaatcaagtgtgagagattatgttccacattgattagaaa 127  Q
    ||||||||||||| | |||||||| ||||||| |||||| | |||| ||||||||| ||||||||  ||||| || ||||||    
T  2463112 tagtgatgtgggtgactcacactttaggagaagattgttggaaaattaagtgtgagtgattatgtctcacatcgactagaaa 2463193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 16143346 - 16143513
Alignment:
Q  1 taggcttgctgg--gggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgt 98  Q
    ||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| | | |||||| ||||||||||||    
T  16143346 taggcttgctggacgggagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgagggggagattgttggaaatcaagtgt 16143445  T
Q  99 gagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataa 168  Q
    ||| ||| |||||||||||    |||||||||||||||  ||| ||||  |||||||| || ||||||||    
T  16143446 gagtgataatgttccacatctgctagaaatggagcaaatgttggatat--ataagagacgagacccataa 16143513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 40196069 - 40195904
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtg 99  Q
    |||||||| ||||| || |||||| ||||||||||||||||||  |||||||||||||| | |||||||||||| | | ||||||  |||||||||||||    
T  40196069 taggcttggtggggtagcgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacacttgagggggagattgttgggaaatcaagtgtg 40195970  T
Q  100 agagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 167  Q
    || ||||||||| ||||| || ||| ||||||| |||| |||   ||||||||||||||| |||||||    
T  40195969 agtgattatgtttcacatcgactaggaatggaggaaacgttg--gatatataagagaggagacccata 40195904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 16869744 - 16869651
Alignment:
Q  19 gggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtta--gaaatcaagtgtgagagattatgt 110  Q
    ||||||| |||||||||||||||||| |||||||||||||| | |||||||||||||| | | |||||  | ||||||||||||| ||||||||    
T  16869744 gggagcaagatcctagtgtggatcatgctagtgatgtgggtgattcacacttgaggaggagaatgttagggtaatcaagtgtgagtgattatgt 16869651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 149
Target Start/End: Complemental strand, 43978796 - 43978675
Alignment:
Q  28 atcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaa-tcaagtgtgagagattatgttccacattgattagaa 126  Q
    ||||||||||||||||  |||||||||||| | | |||||||||||| | | |||||| |||| ||||||||||| |||||||| |||||| || ||| |    
T  43978796 atcctagtgtggatcaaactagtgatgtgg-tgattcacacttgagggggagattgttggaaaatcaagtgtgagtgattatgtcccacatcgactagga 43978698  T
Q  127 atggagcaaacattgaatatata 149  Q
    |||||| |||||||| |||||||    
T  43978697 atggaggaaacattggatatata 43978675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 10 - 98
Target Start/End: Original strand, 32201242 - 32201330
Alignment:
Q  10 tgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgt 98  Q
    ||||| ||||||||| |||||||||||| | ||   |||||||||||||| |||||||||||||| | | |||||||||||||||||||    
T  32201242 tggggaagtgggagcgggatcctagtgtaggtccaactagtgatgtgggtgagtcacacttgagggggagattgttagaaatcaagtgt 32201330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 23162107 - 23162231
Alignment:
Q  13 gggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttc 112  Q
    ||||| ||||||  ||| |||||||||||||  ||||| |||||||| | |||||||||||| |  | | || |||||| ||||||||| |||||||| |    
T  23162107 gggagcgggagcgagattctagtgtggatcaggctagtaatgtgggtgactcacacttgaggggggattggtgagaaataaagtgtgagtgattatgtcc 23162206  T
Q  113 cacattgattagaaatggagcaaac 137  Q
    ||||| |||||| ||||||| ||||    
T  23162207 cacatcgattaggaatggaggaaac 23162231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 32200948 - 32201058
Alignment:
Q  1 taggcttgctgggggagtgggagcag-gatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtg 99  Q
    |||||| | ||||||||| ||||||| ||||||| ||| |||||| |||||||||||||| |||||| ||| ||| | | |||||| | |||||| ||||    
T  32200948 taggctcgatgggggagtaggagcagagatcctaatgtagatcatgctagtgatgtgggtgagtcacgcttaagggggagattgttgggaatcaaatgtg 32201047  T
Q  100 agagattatgt 110  Q
    || ||||||||    
T  32201048 agtgattatgt 32201058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 54017779 - 54017666
Alignment:
Q  19 gggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattatgttccacat 117  Q
    |||||| ||| ||||||||||||||  |||||||||||||| | |||||||||||| | | ||||||  | ||||||||||||| ||||||||  |||||    
T  54017779 gggagcgggaccctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattgttgggtaatcaagtgtgagtgattatgtctcacat 54017680  T
Q  118 tgattagaaatgga 131  Q
     || ||| ||||||    
T  54017679 cgactaggaatgga 54017666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 53595950 - 53596070
Alignment:
Q  81 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataatt 180  Q
    ||||| ||||||||||| ||| |||||||| ||||||||| ||||||| ||| |||  |||   ||||||||||||||| ||||||  ||| || | |      
T  53595950 ttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttg--gatatataagagaggagacccat--aaacccgttacc 53596045  T
Q  181 ttagggttttgggtaagagtgtggt 205  Q
    ||| |||||||||||||||||||||    
T  53596046 ttaaggttttgggtaagagtgtggt 53596070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 53596265 - 53596385
Alignment:
Q  81 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataatt 180  Q
    ||||| ||||||||||| ||| |||||||| ||||||||| ||||||| ||| |||  |||   ||||||||||||||| ||||||  ||| || | |      
T  53596265 ttgttggaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttg--gatatataagagaggagacccat--aaacccgttacc 53596360  T
Q  181 ttagggttttgggtaagagtgtggt 205  Q
    ||| |||||||||||||||||||||    
T  53596361 ttaaggttttgggtaagagtgtggt 53596385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 16871119 - 16871041
Alignment:
Q  89 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 169  Q
    ||||||||||||| |||||||| |||||| |||| | ||||||| |||||  ||  |||||||||||||| ||||||||||    
T  16871119 aatcaagtgtgagtgattatgtcccacatcgatttggaatggaggaaacaaaga--atatataagagagggaacccataaa 16871041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7301548 - 7301400
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||| | ||||||||||||||| |||||||| |||||||||  |||||||||||||| ||||||| |||||||| | ||||||  |||| ||||||||    
T  7301548 taggctcgatgggggagtgggagcgggatcctaatgtggatcaggctagtgatgtgggtgagtcacagttgaggaggatattgttgaaaattaagtgtga 7301449  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    | |||||||| |||||| || ||||||||||| |||| ||| |||||||    
T  7301448 gtgattatgtcccacatcgactagaaatggaggaaacgttggatatata 7301400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 169
Target Start/End: Complemental strand, 11637959 - 11637803
Alignment:
Q  11 gggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgt 110  Q
    ||||||||| |||  |||||||  |||||||||| ||||| |||||| | |||||||||||||| ||| ||||||  |||||||||||||| ||| ||||    
T  11637959 gggggagtgagagtgggatccttatgtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttgaaaatcaagtgtgagtgataatgt 11637860  T
Q  111 tccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 169  Q
     | |||| || ||||| || |||||||||||||||  |||||||||||| |||||||||    
T  11637859 ccaacatcgactagaagtgaagcaaacattgaata--tataagagaggatacccataaa 11637803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 21130217 - 21130105
Alignment:
Q  89 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggtt 188  Q
    ||||||||||||| |||||||| |||||| || ||| ||||||| |||||   || |||||||||||||| ||||||||||  |||||    ||| ||||    
T  21130217 aatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaacaa--aagatatataagagagggaacccataaa--tccattgccttaaggtt 21130122  T
Q  189 ttgggtaagagtgtggt 205  Q
    |||| ||||||||||||    
T  21130121 ttggataagagtgtggt 21130105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 22605415 - 22605337
Alignment:
Q  89 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 169  Q
    ||||||||||||| ||||||||||||||| || ||| ||||||| |||||   |  ||||||||||| |||||||||||||    
T  22605415 aatcaagtgtgagtgattatgttccacatcgactaggaatggaggaaaca--aaggatatataagagtggaaacccataaa 22605337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Original strand, 15092272 - 15092344
Alignment:
Q  13 gggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt 85  Q
    ||||| |||||  ||||||||||||||||||  ||||| |||| ||| | |||||||||||| ||| ||||||    
T  15092272 gggagcgggagtgggatcctagtgtggatcagactagtaatgttggtgactcacacttgaggggaagattgtt 15092344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 13112903 - 13113096
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||||||||||| |||| |||| |||||| ||| |||||| || ||||||| || || |||||||||||||| | | |||||| ||||||||| ||||    
T  13112903 taggcttgctggggaagtgagagcgggatcccagt-tggatcttcttagtgatatgagtgagtcacacttgagggggagattgttggaaatcaagagtga 13113001  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaagag 199  Q
    | ||| || | |||||| || ||||||| ||||||||||||   ||||||||||||||| ||||||  ||| |||| || ||||| |||||||||||||    
T  13113002 gtgataatctcccacatcgactagaaatagagcaaacattg--gatatataagagaggagacccat--aaacccatcatcttaggattttgggtaagag 13113096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 13042907 - 13043100
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||||||||||| |||| | || |||||| ||| |||||| || ||||||| || || |||||||||||||| | | |||||| ||||||||| ||||    
T  13042907 taggcttgctggggaagtgagtgcgggatcccagt-tggatcttcttagtgatatgagtgagtcacacttgagggggagattgttggaaatcaagagtga 13043005  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaagag 199  Q
    | ||| || | |||||| || ||||||| ||||||||||||   ||||||||||||||| ||||||  ||| |||| || ||||| |||||||||||||    
T  13043006 gtgataatctcccacatcgactagaaatagagcaaacattg--gatatataagagaggagacccat--aaacccatcatcttaggattttgggtaagag 13043100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 13042450 - 13042615
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||||| ||||||||||||||  | ||| || |||||  | |||||||||||||||| ||||||||||||| ||    ||||| ||||||||||||||    
T  13042450 taggcttgttgggggagtgggagtggaatcatattgtgggccttcctagtgatgtgggtgagtcacacttgag-agggggttgttggaaatcaagtgtga 13042548  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 169  Q
    | ||| || | |||||| || ||||||| |||||||||||  | ||||||||||||||| |||||||||    
T  13042549 gtgataatatcccacatcgactagaaatagagcaaacatt--agatatataagagaggagacccataaa 13042615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 36389239 - 36389102
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||||||||||||||||||||| | |||||||| |||||| |||||||||||||||  ||||| |||||||| | |  ||||| | ||||||||| ||    
T  36389239 taggcttgctgggggagtgggagcggaatcctagt-tggatcgtcctagtgatgtggg--agtcaaacttgagggggagtttgttgggaatcaagtgcga 36389143  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattg 141  Q
    | ||| |||| ||||||  | ||||||||||||||||||||    
T  36389142 gtgataatgtcccacatcaactagaaatggagcaaacattg 36389102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 13112448 - 13112647
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||||| ||||||||||||||  | ||| || |||||  | |||||||||||||| | ||||||||||||| ||    ||||| ||||||||||||||    
T  13112448 taggcttgttgggggagtgggagtggaatcatattgtgggccttcctagtgatgtggatgagtcacacttgag-agggggttgttggaaatcaagtgtga 13112546  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggttttgggtaagagt 200  Q
    | ||| || | |||||| || ||||||| |||||||||||  | ||||||||||||||| |||||||||   ||||  | ||| |||||||| |||||||    
T  13112547 gtgataatatcccacatcgactagaaatagagcaaacatt--agatatataagagaggagacccataaac--ccattgtcttaaggttttggataagagt 13112642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 14168854 - 14169009
Alignment:
Q  12 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttaga-aatcaagtgtgagagattatgt 110  Q
    |||||| |||| |||||| |||||||||||||| |||||||||||| | | ||| |||||||| | | |||||| || |||||||||| || ||||||||    
T  14168854 ggggagcgggaacaggattctagtgtggatcatgctagtgatgtggatgattcatacttgagggggagattgttggataatcaagtgtaagggattatgt 14168953  T
Q  111 tccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataa 168  Q
     |||||| || ||| ||||||| |||||   |  |||||||||||||| |||||||||    
T  14168954 cccacatcgactaggaatggaggaaaca--aaggatatataagagagggaacccataa 14169009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 13042672 - 13042776
Alignment:
Q  51 gatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatat 150  Q
    ||||||||| |||||||||||||| |   | |||| ||||||||||||||| |||||||| ||||||  | |||||||||||||||||||  | ||||||    
T  13042672 gatgtgggtgagtcacacttgagggggggactgttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacatt--agatatat 13042769  T
Q  151 aagagag 157  Q
    |||||||    
T  13042770 aagagag 13042776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 13112670 - 13112774
Alignment:
Q  51 gatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatat 150  Q
    ||||||||| |||||||||||||| |   | |||| ||||||||||||||| |||||||| ||||||  | |||||||||||||||||||  | ||||||    
T  13112670 gatgtgggtgagtcacacttgagggggggactgttggaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacatt--agatatat 13112767  T
Q  151 aagagag 157  Q
    |||||||    
T  13112768 aagagag 13112774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 117
Target Start/End: Original strand, 41341376 - 41341482
Alignment:
Q  12 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgtt-agaaatcaagtgtgagagattatgt 110  Q
    |||||| | |||| ||||||||||||||||||  |||||||||||||| | |||||||||||| | | ||| ||  | ||||||||||||| ||||||||    
T  41341376 ggggagcgagagcgggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattattgggtaatcaagtgtgagtgattatgt 41341475  T
Q  111 tccacat 117  Q
     ||||||    
T  41341476 cccacat 41341482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 132
Target Start/End: Original strand, 34103552 - 34103595
Alignment:
Q  89 aatcaagtgtgagagattatgttccacattgattagaaatggag 132  Q
    ||||||||||||| ||||||||||||||| || |||||||||||    
T  34103552 aatcaagtgtgagtgattatgttccacatcgaatagaaatggag 34103595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 203
Target Start/End: Original strand, 13112245 - 13112356
Alignment:
Q  88 aaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataattttagggt 187  Q
    ||||||||||||||  || ||||  |||||||||||||| ||||||||| |||  | ||||||||| ||||| ||||  ||||| ||||  | |||| ||    
T  13112245 aaatcaagtgtgagtaataatgtctcacattgattagaattggagcaaaaatt--agatatataagtgaggagaccc--aaaaacccatcgtcttagagt 13112340  T
Q  188 tttgggtaagagtgtg 203  Q
    ||| ||||||||||||    
T  13112341 ttttggtaagagtgtg 13112356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 33036303 - 33036258
Alignment:
Q  87 gaaatcaagtgtgagagattatgttccacattgattagaaatggag 132  Q
    ||||| ||||||||| ||||||||| ||||| ||||||||||||||    
T  33036303 gaaattaagtgtgagggattatgtttcacatcgattagaaatggag 33036258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 31973583 - 31973452
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||| | ||| ||||||||||| ||||||||||||||||||  ||||||||||| || |||||||||||||| | | |||||| ||||||||||||||    
T  31973583 taggctcgatggaggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttgagggggagattgttggaaatcaagtgtga 31973484  T
Q  101 gagattatgttccacattgattagaaatggag 132  Q
    | ||||||||  ||||  || |||||||||||    
T  31973483 gtgattatgtctcacaccgactagaaatggag 31973452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 34666057 - 34665930
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||| |||||||  |||||||| ||||||||||||||||||  ||||||||||| || | ||||||||||||   | |||||| ||||||| ||||||    
T  34666057 taggctcgctggggtggtgggagcgggatcctagtgtggatcacactagtgatgtgagtaaatcacacttgagggagagattgttggaaatcatgtgtga 34665958  T
Q  101 gagattatgttccacattgattagaaat 128  Q
    | |||||| | |||||| || |||||||    
T  34665957 gtgattatatcccacatcgactagaaat 34665930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 47159205 - 47159161
Alignment:
Q  26 ggatcctagtgtggatcatcctagtgatgtgggttagtcacactt 70  Q
    |||||||||||||||||||||||||||||||| | ||||||||||    
T  47159205 ggatcctagtgtggatcatcctagtgatgtggatgagtcacactt 47159161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 12466272 - 12466341
Alignment:
Q  80 attgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    ||||||||||||||||||| || |||||||| ||||||  | ||||||||||| |||| ||| |||||||    
T  12466272 attgttagaaatcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatatata 12466341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 25294947 - 25294887
Alignment:
Q  89 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    ||||||||||||| |||||||| ||||||||  ||| ||||||| |||||||| |||||||    
T  25294947 aatcaagtgtgagtgattatgtcccacattggctaggaatggaggaaacattggatatata 25294887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 27686685 - 27686608
Alignment:
Q  88 aaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 167  Q
    |||| ||||||||| ||||||||||||||| || ||| ||||||| |||||||  | ||||||||||||| |||| ||||    
T  27686685 aaattaagtgtgagtgattatgttccacatcgactaggaatggaggaaacatt--agatatataagagagaaaactcata 27686608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 43834430 - 43834512
Alignment:
Q  26 ggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattat 108  Q
    ||||||||||||||||||  ||||||||||| || | |||||||||||| | | |||||| |   ||||||||||| ||||||    
T  43834430 ggatcctagtgtggatcaggctagtgatgtgagtgactcacacttgaggtggagattgttgggtttcaagtgtgagtgattat 43834512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 5981680 - 5981542
Alignment:
Q  12 ggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattg-ttagaaatcaagtgtgagagattatgt 110  Q
    ||||||||||||| ||||||||||||||||||  |||||||||||||| | |||| ||||||| | | |||| || ||||||||||||||| ||||||||    
T  5981680 ggggagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacgcttgagggggagattgtttggaaatcaagtgtgagtgattatgt 5981581  T
Q  111 tccacattgattagaaatggagcaaacattgaatatata 149  Q
     |||||| || ||| ||||||| |||| ||| |||||||    
T  5981580 cccacatcgactaggaatggagaaaacgttggatatata 5981542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 2954473 - 2954309
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||||| | |||||||||||||||| |||||||||||||||||  |||||||||||||| | |||||||||||| | | ||||||     ||||||||||    
T  2954473 taggctcggtgggggagtgggagcaagatcctagtgtggatcaagctagtgatgtgggtgactcacacttgagggggagattgttgagtttcaagtgtga 2954374  T
Q  101 gagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 167  Q
    | |||||| | |||||| || ||| ||||||| |||  |||   ||||||||||||||| |||||||    
T  2954373 gtgattatttcccacatcgactaggaatggagaaaatgttg--gatatataagagaggagacccata 2954309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3671099 - 3671046
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatg 54  Q
    |||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  3671099 taggcttgctgggggagtgggagcgggatcctagtgtggatcgtcctagtgatg 3671046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 23753146 - 23753048
Alignment:
Q  1 taggcttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtga 100  Q
    |||| ||| ||| ||||||||||| |||| ||||| ||||||||| ||||||||||||| | |||||||||||| | | |||| | ||||||||||||||    
T  23753146 taggtttgatggaggagtgggagcgggattctagt-tggatcatcgtagtgatgtgggtgaatcacacttgagggggagattgatggaaatcaagtgtga 23753048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 5981893 - 5981815
Alignment:
Q  89 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 169  Q
    ||||||||||||| |||||||| ||||||  ||||| ||||||| |||| |||   ||||||||||||||  |||||||||    
T  5981893 aatcaagtgtgagggattatgtcccacatcaattaggaatggaggaaacgttg--gatatataagagaggggacccataaa 5981815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 138
Target Start/End: Complemental strand, 12156818 - 12156769
Alignment:
Q  89 aatcaagtgtgagagattatgttccacattgattagaaatggagcaaaca 138  Q
    ||||||||||||| |||||||| |||||| |||||| ||||||| |||||    
T  12156818 aatcaagtgtgagtgattatgtcccacatcgattaggaatggaggaaaca 12156769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 137
Target Start/End: Complemental strand, 11727869 - 11727758
Alignment:
Q  26 ggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattaga 125  Q
    ||||||||||||||||||  |||||||||||||| | ||||||| |||  | | ||| ||  |||| |||||||||  ||||||||| ||||||| ||||    
T  11727869 ggatcctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagattattgaaaattaagtgtgagtaattatgttctacattgactaga 11727770  T
Q  126 aatggagcaaac 137  Q
    ||||||| ||||    
T  11727769 aatggagaaaac 11727758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 28226327 - 28226447
Alignment:
Q  81 ttgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaaaatccataatt 180  Q
    ||||| ||||||||||||||| | | |||| |||||| || ||||||||||| |||| |||   ||||||||||||||| ||||||||| |  |||  |     
T  28226327 ttgttggaaatcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaacgttg--gatatataagagaggagacccataaaca--cattgtc 28226422  T
Q  181 ttagggttttgggtaagagtgtggt 205  Q
    |||||||||| ||||||||||||||    
T  28226423 ttagggttttaggtaagagtgtggt 28226447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 28226571 - 28226731
Alignment:
Q  5 cttgctgggggagtgggagcaggatcctagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagaga 104  Q
    ||||||||| |||||||||| |||||||||| || |||| |||||||||| || | |||||| ||||||| | | |||||| ||||||||||||||  ||    
T  28226571 cttgctgggagagtgggagcgggatcctagt-tgaatcaacctagtgatgagg-tgagtcacgcttgagggggagattgttggaaatcaagtgtgactga 28226668  T
Q  105 ttatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccataaa 169  Q
    | || |  ||||| ||  |||||||| ||||| ||||   ||||||||||||||| || ||||||    
T  28226669 taatatcacacatcgacaagaaatggggcaaatattg--gatatataagagaggagactcataaa 28226731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 101
Target Start/End: Complemental strand, 44981986 - 44981910
Alignment:
Q  26 ggatcctagtgtggatcatc-ctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgag 101  Q
    ||||||||||||||||||   |||||||||||||| | |||||||||||| | |||||| | ||| |||||||||||    
T  44981986 ggatcctagtgtggatcaaggctagtgatgtgggtgactcacacttgagggggaaattgctggaattcaagtgtgag 44981910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 13792664 - 13792594
Alignment:
Q  79 aattgttagaaatcaagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatata 149  Q
    ||||||| ||||||||||||||| |||||||| ||||||  | ||||||||||| ||| |||  |||||||    
T  13792664 aattgttggaaatcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatata 13792594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 132
Target Start/End: Complemental strand, 4286 - 4186
Alignment:
Q  32 tagtgtggatcatcctagtgatgtgggttagtcacacttgaggagaaaattgttagaaatcaagtgtgagagattatgttccacattgattagaaatgga 131  Q
    ||||||||||||  |||||||||||| | | ||||| |||||| ||| ||||| |||||| ||||||||| |||| |||  ||||| || || |||||||    
T  4286 tagtgtggatcaagctagtgatgtggatgactcacatttgaggggaagattgtcagaaattaagtgtgagtgattgtgtctcacatcgactataaatgga 4187  T
Q  132 g 132  Q
    |    
T  4186 g 4186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 167
Target Start/End: Complemental strand, 27604 - 27532
Alignment:
Q  93 aagtgtgagagattatgttccacattgattagaaatggagcaaacattgaatatatataagagaggaaacccata 167  Q
    ||||||||| |||||||||| |||| || ||||||||||  |||||||||  ||| ||||||||||| |||||||    
T  27604 aagtgtgagtgattatgttctacatcgactagaaatggaagaaacattga--atacataagagaggagacccata 27532  T

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