View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10179_low_87 (Length: 250)

Name: NF10179_low_87
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10179_low_87
NF10179_low_87
[»] chr7 (11 HSPs)
chr7 (115-240)||(38038213-38038342)
chr7 (116-206)||(29390490-29390578)
chr7 (119-176)||(30181637-30181694)
chr7 (1-32)||(38038099-38038130)
chr7 (116-201)||(14691238-14691321)
chr7 (116-201)||(29378709-29378792)
chr7 (115-169)||(32358703-32358757)
chr7 (115-169)||(34923027-34923081)
chr7 (116-165)||(1401171-1401220)
chr7 (116-169)||(33204928-33204981)
chr7 (116-160)||(26331868-26331912)
[»] chr5 (9 HSPs)
chr5 (118-176)||(35083326-35083384)
chr5 (116-169)||(6125380-6125433)
chr5 (116-169)||(24030308-24030361)
chr5 (115-160)||(29136764-29136809)
chr5 (116-169)||(40452416-40452469)
chr5 (116-169)||(41059728-41059781)
chr5 (116-194)||(5559858-5559934)
chr5 (116-193)||(1943067-1943142)
chr5 (116-201)||(28625544-28625627)
[»] chr2 (8 HSPs)
chr2 (116-201)||(4026989-4027072)
chr2 (115-201)||(7480837-7480921)
chr2 (116-163)||(37420006-37420053)
chr2 (116-201)||(21788521-21788604)
chr2 (116-201)||(36501454-36501537)
chr2 (116-169)||(8832551-8832604)
chr2 (116-169)||(29774839-29774892)
chr2 (116-169)||(38216113-38216166)
[»] chr8 (9 HSPs)
chr8 (116-200)||(32131505-32131587)
chr8 (116-181)||(32212954-32213019)
chr8 (116-206)||(25465786-25465874)
chr8 (116-201)||(10213759-10213842)
chr8 (116-201)||(34286503-34286586)
chr8 (116-196)||(25333640-25333718)
chr8 (116-165)||(28879153-28879202)
chr8 (116-168)||(32975782-32975834)
chr8 (116-176)||(41145335-41145395)
[»] chr4 (17 HSPs)
chr4 (116-169)||(34526276-34526329)
chr4 (116-206)||(11256600-11256688)
chr4 (116-201)||(36254975-36255058)
chr4 (116-181)||(9153521-9153586)
chr4 (116-159)||(35405787-35405830)
chr4 (115-169)||(488322-488376)
chr4 (116-201)||(18630834-18630917)
chr4 (116-201)||(22273844-22273927)
chr4 (129-201)||(34633455-34633524)
chr4 (116-201)||(38345761-38345844)
chr4 (116-201)||(41228967-41229050)
chr4 (116-201)||(48591363-48591446)
chr4 (116-169)||(897064-897117)
chr4 (116-169)||(29877733-29877786)
chr4 (116-181)||(36740986-36741051)
chr4 (116-165)||(48667768-48667817)
chr4 (117-181)||(48687016-48687080)
[»] chr1 (13 HSPs)
chr1 (116-200)||(28690069-28690151)
chr1 (124-201)||(16888913-16888988)
chr1 (116-201)||(37712131-37712214)
chr1 (116-169)||(48819393-48819446)
chr1 (116-168)||(47413467-47413519)
chr1 (116-167)||(19220269-19220320)
chr1 (116-201)||(13039011-13039094)
chr1 (116-201)||(37329351-37329434)
chr1 (116-201)||(46689489-46689572)
chr1 (116-169)||(9572723-9572776)
chr1 (120-169)||(41003481-41003530)
chr1 (125-169)||(22593355-22593399)
chr1 (116-160)||(26988251-26988295)
[»] chr6 (11 HSPs)
chr6 (116-183)||(10755222-10755289)
chr6 (116-168)||(35071367-35071419)
chr6 (116-155)||(12816840-12816879)
chr6 (117-167)||(3210929-3210979)
chr6 (116-201)||(32675828-32675911)
chr6 (116-181)||(6752894-6752959)
chr6 (117-201)||(10687374-10687456)
chr6 (115-176)||(12817046-12817107)
chr6 (116-169)||(23239341-23239394)
chr6 (125-169)||(9201669-9201713)
chr6 (116-160)||(9764330-9764374)
[»] chr3 (6 HSPs)
chr3 (116-201)||(40240516-40240599)
chr3 (116-201)||(48597805-48597889)
chr3 (116-166)||(31787619-31787669)
chr3 (116-201)||(43079873-43079956)
chr3 (116-166)||(46573393-46573443)
chr3 (116-201)||(52895344-52895427)


Alignment Details
Target: chr7 (Bit Score: 101; Significance: 4e-50; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 115 - 240
Target Start/End: Original strand, 38038213 - 38038342
Alignment:
Q  115 aaaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgttttgcataggataaa- 213  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  38038213 aaaaaatagtttatgcaaataaataagcgattacgttaattcataatttctcactcatgaaacttgtttatcttcataagttgttttgcataggataaaa 38038312  T
Q  214 ---aaataaatcaatacaaacaagcctttg 240  Q
       ||||||||||||||||||||| |||||    
T  38038313 aataaataaatcaatacaaacaaggctttg 38038342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 29390490 - 29390578
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgttttgcata 206  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| ||||  || | |||| |||  ||||||||||||||||||| ||||    
T  29390490 aaaaatagtttatgcaaataaataagcttttatgttaattcataaattctagctaacgaaaattg--tatcttcataagttgtttttcata 29390578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 30181694 - 30181637
Alignment:
Q  119 aatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaa 176  Q
    ||||||||||||||||||||||||  ||||||||||| |||| ||| |||| ||||||    
T  30181694 aatagtttatgcaaataaataagcttttatgttaattcataagttcccactaatgaaa 30181637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38038099 - 38038130
Alignment:
Q  1 aagtttgtgccttaatctatgatcatggctac 32  Q
    ||||||||||||||||||||||||||||||||    
T  38038099 aagtttgtgccttaatctatgatcatggctac 38038130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 14691238 - 14691321
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||||| |||||||||||||| |  ||||||||||| |||| |||||||| | |||| |  | ||||||||||| |||||||    
T  14691238 aaaaatagttcatgcaaataaataaccttttatgttaattcataagttctcactaacgaaaat--tatatcttcataaattgtttt 14691321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 29378792 - 29378709
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||||||||||||||  ||| ||||||| |||| |||| ||| | |||| |||  |||||||||||| ||||||    
T  29378792 aaaaatagcttatgcaaataaataagcttttacgttaattcataagttcttactaacgaaaattg--tatcttcataagctgtttt 29378709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 32358757 - 32358703
Alignment:
Q  115 aaaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||| |||||||||  ||||||||||| |||| ||||||||    
T  32358757 aaaaaataatttatgcaagtaaataagcttttatgttaatttataagttctcact 32358703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 34923081 - 34923027
Alignment:
Q  115 aaaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    ||||||||| ||||||||||||||||||  |||||||| || |||| ||||||||    
T  34923081 aaaaaatagcttatgcaaataaataagcttttatgttagttcataagttctcact 34923027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 1401220 - 1401171
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttct 165  Q
    |||||||||| ||||||||||||||||  ||||||||||| |||| ||||    
T  1401220 aaaaatagttcatgcaaataaataagcttttatgttaattcataagttct 1401171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 33204981 - 33204928
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||  ||||||||||||||||||  ||||||||||| |||| ||||||||    
T  33204981 aaaaatatcttatgcaaataaataagcttttatgttaattcataagttctcact 33204928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 26331912 - 26331868
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataa 160  Q
    |||||||| ||||||||||||||||||  ||||||||||| ||||    
T  26331912 aaaaatagcttatgcaaataaataagcttttatgttaattcataa 26331868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 176
Target Start/End: Complemental strand, 35083384 - 35083326
Alignment:
Q  118 aaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaa 176  Q
    |||||||||||||||||||||||||  ||||||||||| |||| |||||||| ||||||    
T  35083384 aaatagtttatgcaaataaataagcttttatgttaattcataagttctcactgatgaaa 35083326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 6125433 - 6125380
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||||||||||  |||| |||||| |||||||||||||    
T  6125433 aaaaatagcttatgcaaataaataagcttttatattaattcataatttctcact 6125380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 24030361 - 24030308
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| ||||||||    
T  24030361 aaaaatagcttatgcaaataaataagcttttatgttaattcataagttctcact 24030308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 29136764 - 29136809
Alignment:
Q  115 aaaaaatagtttatgcaaataaataagcgattatgttaattaataa 160  Q
    ||||||||||||||||||||||||||||  ||||||||||| ||||    
T  29136764 aaaaaatagtttatgcaaataaataagcttttatgttaattcataa 29136809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 40452416 - 40452469
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| |||||||||||||||||| |||||||| ||| |||| ||||||||    
T  40452416 aaaaatagcttatgcaaataaataagctattatgtttattcataagttctcact 40452469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 41059728 - 41059781
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    ||||| |||||||||||||||||||||  ||||||||||| |||| ||||||||    
T  41059728 aaaaacagtttatgcaaataaataagcttttatgttaattcataagttctcact 41059781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 5559858 - 5559934
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataag 194  Q
    |||||||| ||||||||||||||||||  |||||| |||| |||| |||||||| | |||| |||  ||||||||||||    
T  5559858 aaaaatagcttatgcaaataaataagcttttatgtaaattcataaattctcactaacgaaaattg--tatcttcataag 5559934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 193
Target Start/End: Complemental strand, 1943142 - 1943067
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataa 193  Q
    |||||| | ||||||||||||||||||  ||||| ||||| |||| |||||||| |||||| |||  |||||||||||    
T  1943142 aaaaatggcttatgcaaataaataagcttttatgctaattcataagttctcactaatgaaaattg--tatcttcataa 1943067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 28625627 - 28625544
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||  ||||||||||||||||||  ||||||||||| |||  |||||||| | |||| |||  |||||||||||| ||||||    
T  28625627 aaaaataacttatgcaaataaataagcttttatgttaattcataggttctcactaacgaaaattg--tatcttcataagctgtttt 28625544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 4027072 - 4026989
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| |||||||||||||||||| |||||||||||| |||| |||||||| |  ||| |||  |||||||||||| ||||||    
T  4027072 aaaaatagcttatgcaaataaataagctattatgttaattcataagttctcactaacaaaaattg--tatcttcataagctgtttt 4026989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 201
Target Start/End: Original strand, 7480837 - 7480921
Alignment:
Q  115 aaaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    ||||||||| |||||||||||||||||   ||||||||||| |||| |||| ||| |||||| |||  ||||||| |||||||||||    
T  7480837 aaaaaatagattatgcaaataaataagtttttatgttaattcataagttctgactaatgaaaattg--tatcttcctaagttgtttt 7480921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 37420053 - 37420006
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataattt 163  Q
    ||||||| |||||||||||||||||||  ||||||||||| |||||||    
T  37420053 aaaaataatttatgcaaataaataagcttttatgttaattcataattt 37420006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 21788604 - 21788521
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||  ||||||||||||||||||  |||| |||||| ||||  ||||||| | |||| |  |||||||||||||||||||||    
T  21788604 aaaaataacttatgcaaataaataagcttttatattaattcataagctctcactaacgaaaat--tttatcttcataagttgtttt 21788521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 36501454 - 36501537
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||||||||||||||  ||||||||||| || | |||||||| | | || |  |||||||||||||| ||||||    
T  36501454 aaaaatagcttatgcaaataaataagcttttatgttaattcatgagttctcactaacgcaaat--tttatcttcataagctgtttt 36501537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 8832604 - 8832551
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| || |||||    
T  8832604 aaaaatagcttatgcaaataaataagcttttatgttaattcataagttttcact 8832551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 29774892 - 29774839
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||||||| ||||||||||||||  ||| ||||||| |||| ||||||||    
T  29774892 aaaaatagtttaagcaaataaataagcttttacgttaattcataagttctcact 29774839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 38216166 - 38216113
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||||||||||  ||||||||| | |||| ||||||||    
T  38216166 aaaaatagcttatgcaaataaataagcttttatgttaactcataagttctcact 38216113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 32131587 - 32131505
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgttt 200  Q
    |||||||||||||||||||| ||||||  ||||||||||| |||| ||||||||  ||||| |||  |||||||||| |||||||    
T  32131587 aaaaatagtttatgcaaatagataagcttttatgttaattcataagttctcactattgaaaattg--tatcttcataggttgttt 32131505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 32212954 - 32213019
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgt 181  Q
    |||||||| ||||||||||||||||||  |||||||| || |||| |||||||| |||||| ||||    
T  32212954 aaaaatagcttatgcaaataaataagcttttatgttattttataagttctcactaatgaaaattgt 32213019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 25465786 - 25465874
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgttttgcata 206  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| || ||| | |  ||| |||  ||||||||||||||||||| ||||    
T  25465786 aaaaatagcttatgcaaataaataagcttttatgttaattcataagttttcagtaacaaaaattg--tatcttcataagttgtttttcata 25465874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 10213842 - 10213759
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||||||||||||||   |||||||||| |||| |||||||| |  ||| |||||  |||||||||| ||||||    
T  10213842 aaaaatagcttatgcaaataaataagcttgtatgttaattcataagttctcactaacaaaaattgtt--tcttcataagctgtttt 10213759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 34286503 - 34286586
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||||||||||||||  |||| |||||| |||| ||||| || | |||| |||  |||||||||||| ||||||    
T  34286503 aaaaataggttatgcaaataaataagcttttatattaattcataagttctccctaacgaaaattg--tatcttcataagctgtttt 34286586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 196
Target Start/End: Original strand, 25333640 - 25333718
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagtt 196  Q
    |||||||| ||||| ||||||||||||  ||||||||||| |||| || ||||| | |||| |||  ||||||||||||||    
T  25333640 aaaaatagcttatgtaaataaataagcttttatgttaattcataagttttcactaacgaaaattg--tatcttcataagtt 25333718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 28879202 - 28879153
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttct 165  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| ||||    
T  28879202 aaaaatagcttatgcaaataaataagcttttatgttaattcataagttct 28879153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 32975834 - 32975782
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcac 168  Q
    |||||||| ||||||||||||||||||  |||| |||||| |||| |||||||    
T  32975834 aaaaatagcttatgcaaataaataagcttttatattaattcataagttctcac 32975782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Original strand, 41145335 - 41145395
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaa 176  Q
    ||||||||||||||||||||||||||    ||| |||||| |||| |||||||| ||||||    
T  41145335 aaaaatagtttatgcaaataaataagtttatatattaattcataagttctcactaatgaaa 41145395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 34526276 - 34526329
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| ||||||||    
T  34526276 aaaaatagtttatgcaaataaataagcttttatgttaattcataagttctcact 34526329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 206
Target Start/End: Original strand, 11256600 - 11256688
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgttttgcata 206  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| ||||| || |  ||| |||  |||||||||||| |||||| ||||    
T  11256600 aaaaatagtttatgcaaataaataagcttttatgttaattcataagttctcgctaactaaaattg--tatcttcataagctgtttttcata 11256688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 36254975 - 36255058
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||| ||||||||||  ||||||||||| |||| |||||||| || ||| |||  |||||||||||| ||||||    
T  36254975 aaaaatagcttatgcagataaataagcttttatgttaattcataagttctcactaattaaaattg--tatcttcataagctgtttt 36255058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 9153521 - 9153586
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgt 181  Q
    |||||||| |||||||||||||||| |  ||||||||||| |||| |||||||| |||||| ||||    
T  9153521 aaaaatagcttatgcaaataaataaacttttatgttaatttataaattctcactgatgaaaattgt 9153586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 159
Target Start/End: Complemental strand, 35405830 - 35405787
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaata 159  Q
    |||||||| ||||||||||||||||||  |||||||||||||||    
T  35405830 aaaaatagcttatgcaaataaataagcttttatgttaattaata 35405787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 169
Target Start/End: Original strand, 488322 - 488376
Alignment:
Q  115 aaaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    ||||||||| ||||| ||||||||||||  ||||||||||| |||| ||||||||    
T  488322 aaaaaatagcttatggaaataaataagcttttatgttaattcataagttctcact 488376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 18630834 - 18630917
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||||||||||||||  |||| |||||| |||| |||||||| | ||||    |||||||||||||| ||||||    
T  18630834 aaaaatagcttatgcaaataaataagcttttatattaattcataagttctcactaacgaaa--actttatcttcataagctgtttt 18630917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 22273927 - 22273844
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| |||||||||||||||| |  ||||||||||| |||| |||||||| |  ||| |||  |||||||||||| ||||||    
T  22273927 aaaaatagattatgcaaataaataaacttttatgttaattcataacttctcactaacaaaaattg--tatcttcataagctgtttt 22273844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 34633524 - 34633455
Alignment:
Q  129 gcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    ||||||||||||||  ||||||||||| |||| |||||||| |||||| |||| |   |||||||||||||||    
T  34633524 gcaaataaataagcttttatgttaattcataagttctcacttatgaaaattgtat---ttcataagttgtttt 34633455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 38345761 - 38345844
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||| ||||||||||||  ||||||||||| |||| ||||  || || ||| |||  |||||||||||||||||||    
T  38345761 aaaaatagcttatgtaaataaataagcttttatgttaattcataagttctggctaataaaaattg--tatcttcataagttgtttt 38345844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 41229050 - 41228967
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| |||||||||||||| |||  |||| |||||| |||| |||| ||| |||||| |||  ||||||||| |||||||||    
T  41229050 aaaaatagcttatgcaaataaattagcttttatattaattcataagttctaactaatgaaaattg--tatcttcatcagttgtttt 41228967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 48591363 - 48591446
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||||||||||||||  ||| ||||||| |||| |||||| | | |||| |||  |||||||||||| ||||||    
T  48591363 aaaaatagcttatgcaaataaataagcttttacgttaattcataagttctcattaacgaaaattg--tatcttcataagctgtttt 48591446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 897117 - 897064
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||||||||||||||||||||||  |||| |||||| |||| || |||||    
T  897117 aaaaatagtttatgcaaataaataagcttttatattaatttataagttttcact 897064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 29877786 - 29877733
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||| ||||||  ||||||||||| |||| ||||||||    
T  29877786 aaaaatagcttatgcaaatatataagcttttatgttaattcataagttctcact 29877733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 36741051 - 36740986
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgt 181  Q
    |||||||| ||||||||||||||||||  || |||| ||| |||| |||||||| |||||| ||||    
T  36741051 aaaaatagcttatgcaaataaataagcttttgtgttgattcataagttctcactaatgaaaattgt 36740986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 48667817 - 48667768
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttct 165  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| ||||    
T  48667817 aaaaatagcttatgcaaataaataagcttttatgttaattcataagttct 48667768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 181
Target Start/End: Complemental strand, 48687080 - 48687016
Alignment:
Q  117 aaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgt 181  Q
    ||||||| |||||||||||||||| |   |||||||||| |||| |||||||| |||||| ||||    
T  48687080 aaaatagcttatgcaaataaataaacttatatgttaattcataagttctcactaatgaaaattgt 48687016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 28690151 - 28690069
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgttt 200  Q
    |||||||| ||||||||||||||||||  ||||||||||| | ||||||||||| || ||| |||  |||||||||||| |||||    
T  28690151 aaaaatagcttatgcaaataaataagcttttatgttaattcagaatttctcactaataaaaattg--tatcttcataagctgttt 28690069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 124 - 201
Target Start/End: Original strand, 16888913 - 16888988
Alignment:
Q  124 tttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||||||||||||||  ||||||||| | |||| |||||||| |||||| |||  |||||||||||| ||||||    
T  16888913 tttatgcaaataaataagcttttatgttaagtcataaattctcactaatgaaaattg--tatcttcataagctgtttt 16888988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 37712214 - 37712131
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| |||||||||||||||| |  ||||||||||| |||| |||| ||| | |||| |||  |||||||||||||||||||    
T  37712214 aaaaatagcttatgcaaataaataaacttttatgttaattcataagttcttactaacgaaagttg--tatcttcataagttgtttt 37712131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 48819446 - 48819393
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| ||||||||    
T  48819446 aaaaatagcttatgcaaataaataagcttttatgttaattcataagttctcact 48819393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 47413519 - 47413467
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcac 168  Q
    |||||||| ||||||||||||||||||  ||||||||||| ||||||| ||||    
T  47413519 aaaaatagcttatgcaaataaataagcttttatgttaatttataatttttcac 47413467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 19220320 - 19220269
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctca 167  Q
    |||||||||||||||||||||||||||  |||| |||||| ||||| |||||    
T  19220320 aaaaatagtttatgcaaataaataagcttttattttaatttataatctctca 19220269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 13039094 - 13039011
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| |||||||||||||||| |  |||| |||||| |||| |||||||| | ||||    |||||||||||||||||||||    
T  13039094 aaaaatagcttatgcaaataaataaacttttatattaattcataacttctcactaacgaaa--actttatcttcataagttgtttt 13039011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 37329351 - 37329434
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||  ||||||||||||||||||  ||||||||||| |||| |||||||  | |||| |||  |||||||||||| ||||||    
T  37329351 aaaaataacttatgcaaataaataagcttttatgttaatttataagttctcaccaacgaaaattg--tatcttcataagctgtttt 37329434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 46689489 - 46689572
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||  |||||||||||||||| | ||||| |||||| |||| |||||||| | |||| |  ||||| |||||||||||||||    
T  46689489 aaaaataacttatgcaaataaataaactattatattaattcataagttctcactaacgaaaat--tttattttcataagttgtttt 46689572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 9572723 - 9572776
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||||||||||  |||| |||||| |||| ||||||||    
T  9572723 aaaaatagcttatgcaaataaataagcttttatattaattcataagttctcact 9572776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 41003530 - 41003481
Alignment:
Q  120 atagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| |||||||||||| |  |||||||||||||||| ||||||||    
T  41003530 atagtttaagcaaataaataaacttttatgttaattaataagttctcact 41003481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 22593355 - 22593399
Alignment:
Q  125 ttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    ||||||||||||||||||  ||||||||||| |||| ||||||||    
T  22593355 ttatgcaaataaataagcttttatgttaatttataagttctcact 22593399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 26988295 - 26988251
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataa 160  Q
    ||||||||||||||||||||||| |||  ||||||||||| ||||    
T  26988295 aaaaatagtttatgcaaataaattagcttttatgttaattcataa 26988251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 183
Target Start/End: Original strand, 10755222 - 10755289
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgttt 183  Q
    |||||||||||||||||||||||||||  ||||||||||| |||| |||| ||| | |||| ||||||    
T  10755222 aaaaatagtttatgcaaataaataagcttttatgttaattcataagttcttactaacgaaaattgttt 10755289  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 168
Target Start/End: Original strand, 35071367 - 35071419
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcac 168  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| |||||||    
T  35071367 aaaaatagcttatgcaaataaataagcttttatgttaattcataagttctcac 35071419  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 155
Target Start/End: Original strand, 12816840 - 12816879
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaatt 155  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  12816840 aaaaatagtttatgcaaataaataagcttttatgttaatt 12816879  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 3210929 - 3210979
Alignment:
Q  117 aaaatagtttatgcaaataaataagcgattatgttaattaataatttctca 167  Q
    ||||||| ||||||||||||||||||  ||||||||||| |||| ||||||    
T  3210929 aaaatagcttatgcaaataaataagcttttatgttaattcataagttctca 3210979  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 32675828 - 32675911
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||  |||||||||||||||||   |||| |||||| |||| |||||||| |||||| |||  |||||||||||||| ||||    
T  32675828 aaaaataacttatgcaaataaataagtttttatattaattcataagttctcactaatgaaaattg--tatcttcataagttatttt 32675911  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 181
Target Start/End: Complemental strand, 6752959 - 6752894
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgt 181  Q
    |||||||| ||||||||||||||||||  |||| |||||| |||| | |||||| |||||| ||||    
T  6752959 aaaaatagcttatgcaaataaataagcttttatattaattcataaatcctcactaatgaaaattgt 6752894  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 10687456 - 10687374
Alignment:
Q  117 aaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    ||||||||||||||||||||||||||  |||||| | || |||| ||||| || | |||| |||  ||||| |||||||||||||    
T  10687456 aaaatagtttatgcaaataaataagcttttatgtcagttcataagttctcgctaacgaaaattg--tatctccataagttgtttt 10687374  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 12817046 - 12817107
Alignment:
Q  115 aaaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaa 176  Q
    ||||||||| ||||||||||||||||||  ||||||||||| |||  || ||||| ||||||    
T  12817046 aaaaaatagcttatgcaaataaataagcttttatgttaatttatatgttttcactaatgaaa 12817107  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 23239394 - 23239341
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    |||||||| ||||||||||||||||||  |||| |||||| |||| ||||||||    
T  23239394 aaaaatagcttatgcaaataaataagcttttatattaattcataagttctcact 23239341  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 9201669 - 9201713
Alignment:
Q  125 ttatgcaaataaataagcgattatgttaattaataatttctcact 169  Q
    ||||||||||||||||||  ||||||||||| |||| ||||||||    
T  9201669 ttatgcaaataaataagcttttatgttaattcataagttctcact 9201713  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 160
Target Start/End: Original strand, 9764330 - 9764374
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataa 160  Q
    ||||||| |||||||||||||||||||  ||||||||||| ||||    
T  9764330 aaaaataatttatgcaaataaataagcttttatgttaatttataa 9764374  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 40240516 - 40240599
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| ||||||||||||||||||  |||| |||||| ||||  ||||||| | |||| |||  |||||||||||||||||||    
T  40240516 aaaaatagcttatgcaaataaataagcttttatcttaattcataagctctcactaacgaaaattg--tatcttcataagttgtttt 40240599  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 48597805 - 48597889
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaatt-aataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    ||||||||| | |||||||||||||||  ||||||||||| | ||| |||||||| | |||| |||  |||||||||||||||||||    
T  48597805 aaaaatagtgtttgcaaataaataagcttttatgttaattcattaagttctcactgacgaaaattg--tatcttcataagttgtttt 48597889  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 31787669 - 31787619
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctc 166  Q
    ||||||||||||||||||||||||| || |||| |||||| |||| |||||    
T  31787669 aaaaatagtttatgcaaataaataaacgtttatattaattcataagttctc 31787619  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 43079873 - 43079956
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||||| |||| |||||||||||||  ||| ||||||| |||| |||||| ||| |||| |||  |||||||||||| ||||||    
T  43079873 aaaaatagcttattcaaataaataagcttttaagttaattcataagttctcaatcacgaaaattg--tatcttcataagctgtttt 43079956  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 46573393 - 46573443
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctc 166  Q
    |||||||| ||||||||||||||||||  ||||||||||| |||| |||||    
T  46573393 aaaaatagcttatgcaaataaataagcttttatgttaattcataaattctc 46573443  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 201
Target Start/End: Original strand, 52895344 - 52895427
Alignment:
Q  116 aaaaatagtttatgcaaataaataagcgattatgttaattaataatttctcactcatgaaacttgtttatcttcataagttgtttt 201  Q
    |||||| ||||| ||||||||||||||  ||||||||||| |||| |||||||| | |||| |||  || ||||| ||||||||||    
T  52895344 aaaaattgtttaggcaaataaataagcttttatgttaattcataaattctcactaacgaaaattg--taacttcagaagttgtttt 52895427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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