View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_90 (Length: 249)
Name: NF10179_low_90
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_90 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 493304 - 493548
Alignment:
| Q |
1 |
ctgttttaatccttcaagttataaagtaacacaattatcctttttatacttaaaaaatcacaaaaatccagaaattcataacatttatcataatattcaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493304 |
ctgttttagtccttcaagttataaagtaacacaattatcctttttacacttaaaaaatcacaaaaatccagaaattcataacatttatcataatattcaa |
493403 |
T |
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| Q |
101 |
tnnnnnnn--tccatatattcatcaattaaaccgagattttttccttttagacttaattattttatttctaatatgaaagagtaatttaaggagagactc |
198 |
Q |
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| T |
493404 |
taaaaaaaaatccatatattcatcaattaaaccgagattttttccttttagacttaattattttatttctaat--gaaagagtaatttaaggagagactc |
493501 |
T |
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| Q |
199 |
taaatcttcatcccaaaaggccaatccttaacaaattcttctctctc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
493502 |
taaatcttcatcccaaaaggccaatccttaacaaattcttctttctc |
493548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 42264469 - 42264713
Alignment:
| Q |
1 |
ctgttttaatccttcaagttataaagtaacacaattatcctttttatacttaaaaaatcacaaaaatccagaaattcataacatttatcataatattcaa |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42264469 |
ctgttttagtccttcaagttataaagtaacacaattatcctttttacacttaaaaaatcacaaaaatccagaaattcataacatttatcataatattcaa |
42264568 |
T |
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| Q |
101 |
tnnnnnnn--tccatatattcatcaattaaaccgagattttttccttttagacttaattattttatttctaatatgaaagagtaatttaaggagagactc |
198 |
Q |
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| T |
42264569 |
taaaaaaaaatccatatattcatcaattaaaccgagattttttccttttagacttaattattttatttctaat--gaaagagtaatttaaggagagactc |
42264666 |
T |
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| Q |
199 |
taaatcttcatcccaaaaggccaatccttaacaaattcttctctctc |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42264667 |
taaatcttcatcccaaaaggccaatccttaacaaattcttctttctc |
42264713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 42242798 - 42242934
Alignment:
| Q |
109 |
tccatatattcatcaattaaaccgagattttttc-cttttagacttaattattttatttctaatatgaaagagtaatttaaggagagactctaaatcttc |
207 |
Q |
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|||||||||||||||| |||||| |||||||||| |||| ||| |||||||||||||||||||| ||| |||||||| | ||||||||| |||||||| |
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| T |
42242798 |
tccatatattcatcaaataaaccaagattttttctctttcagatttaattattttatttctaatt--aaacagtaattttaagagagactcaaaatcttc |
42242895 |
T |
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| Q |
208 |
atcccaaaaggccaatccttaacaaattcttctctctcg |
246 |
Q |
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|||| |||||||||||||| ||||| ||||||||||||| |
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| T |
42242896 |
atcctaaaaggccaatcctcaacaatttcttctctctcg |
42242934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 42274949 - 42275057
Alignment:
| Q |
29 |
acacaattatcctttttatacttaaaaaatcacaaaaatccagaaattcataacatttatcataatattcaatnnnnnnntccatatattcatcaattaa |
128 |
Q |
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||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||| || ||| |
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| T |
42274949 |
acacaattatccttttt-tacataaaaaatcacaaaaatccagaaattcataacatttaacttaatattcaat-aaaaaatccatatattcattaaataa |
42275046 |
T |
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| Q |
129 |
accgagatttt |
139 |
Q |
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||||||||||| |
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| T |
42275047 |
accgagatttt |
42275057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 192 - 245
Target Start/End: Original strand, 42275062 - 42275115
Alignment:
| Q |
192 |
gagactctaaatcttcatcccaaaaggccaatccttaacaaattcttctctctc |
245 |
Q |
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||||||| ||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
42275062 |
gagactcaaaatcttcatcccaaaaggccaatccttaacaatttcttctatctc |
42275115 |
T |
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