View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_92 (Length: 248)
Name: NF10179_low_92
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_92 |
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| [»] scaffold0223 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 50872830 - 50872591
Alignment:
| Q |
1 |
agtatataagatcaaaagtccctcgtttgagatggactcctgaacttcatcgttgctttgttcatgctattcaaacccttggaggtcatcatagtaagtt |
100 |
Q |
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| T |
50872830 |
agtatataagatcaaaagtccctcgtttgagatggactcctgaacttcatcgttgctttgttcatgctattcaaacccttggaggtcatcatagtaagtt |
50872731 |
T |
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| Q |
101 |
tctttcttcactctctctatacatgtttatttgtttcttgtccaagtttttctttctatcaagttttctga--------nnnnnnnnnnnactttgtatt |
192 |
Q |
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| T |
50872730 |
tctttcttcactctctctatacatgtttatttgtttcttgtccaagtgtttctttctatcaagttttctgatttttttttttttttttttactttgtatt |
50872631 |
T |
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| Q |
193 |
tttggcagaggctactcctaaacttgttcttcagttgatg |
232 |
Q |
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| T |
50872630 |
tttggcagaggctactcctaaacttgttcttcagttgatg |
50872591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0223
Description:
Target: scaffold0223; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 21415 - 21326
Alignment:
| Q |
7 |
taagatcaaaagtccctcgtttgagatggactcctgaacttcatcgttgctttgttcatgctattcaaacccttggaggtcatcatagta |
96 |
Q |
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| T |
21415 |
taagatcaaaggttcctcgtttaagatggacacctgaacttcatcgttgctttgtttatgccattgaaactcttggtggtcatcaaagta |
21326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0223; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 199 - 232
Target Start/End: Complemental strand, 21219 - 21186
Alignment:
| Q |
199 |
agaggctactcctaaacttgttcttcagttgatg |
232 |
Q |
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| T |
21219 |
agaggctactcctaaacttgttcttcagttgatg |
21186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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