View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_93 (Length: 247)
Name: NF10179_low_93
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_93 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 12718100 - 12718328
Alignment:
| Q |
1 |
ttggggagactaaaagcgcttagaacggcactgagctaaacgtctagaaccaactaagaga-ttacaggagatattctaacagctagaatactttcaaaa |
99 |
Q |
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| T |
12718100 |
ttggggagactaagagcgcttaaagcggcaatgagctaaacgtctagaaccaactaagagaattatagaagatattctaaccgctagaatactttcaaaa |
12718199 |
T |
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| Q |
100 |
ccggaaaagaatagagaattatagaagatattaattttttgcagatatataagatgttaaaatcatctctcaagttgtaattgacgtggggtatatgagt |
199 |
Q |
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| T |
12718200 |
ccggaaaagaatagagaattatagaagatattaattttgtgcggatatatacgatgttaaaatcatctctcaagttgtaattgacgtgggg--tatgagt |
12718297 |
T |
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| Q |
200 |
ttcatttcctttctagatgatagggaaacaa |
230 |
Q |
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| T |
12718298 |
ttcatttcctttctagatgatagggaaacaa |
12718328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 12714364 - 12714468
Alignment:
| Q |
111 |
tagagaattatagaagatattaattttttgcagatatataagatgttaaaatcatctctcaagttgtaattgacgtggggtatatgagtttcatttcctt |
210 |
Q |
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| T |
12714364 |
tagagaattgcaaaagatatta-ttttttgtggatatatacgatgttaaaatcatctctcaagttgtaattgacgtggggtatatgagtttcatttcctt |
12714462 |
T |
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| Q |
211 |
tctaga |
216 |
Q |
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| T |
12714463 |
tctaga |
12714468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 12694140 - 12694200
Alignment:
| Q |
152 |
gatgttaaaatcatctctcaagttgtaattgacgtggggtatatgagtttcatttcctttc |
212 |
Q |
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| T |
12694140 |
gatgttaaagttatctctcaagttgtaattaacgtagggtatatgagtttcatttcctttc |
12694200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 12690711 - 12690653
Alignment:
| Q |
171 |
aagttgtaattgacgtggggtatatgagtttcatttcctttctagatgatagggaaaca |
229 |
Q |
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| T |
12690711 |
aagttgtaattgacgtggggtataggagtttcatttcctttttaggtgattgggaaaca |
12690653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 12698289 - 12698341
Alignment:
| Q |
157 |
taaaatcatctctcaagttgtaattgacgtggggtatatgagtttcatttccttt |
211 |
Q |
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| T |
12698289 |
taaaatcatctatcaagttgtaattgacgtgggg--tatgaggttcatttccttt |
12698341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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