View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10179_low_99 (Length: 240)
Name: NF10179_low_99
Description: NF10179
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10179_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 31929128 - 31928905
Alignment:
| Q |
1 |
caccgtttgcaaacgcaggcgcaagcgacgacgtttcgacgatgcggccattgttctccgatgacatcaactcgtttaatgatatccgcaagaagttctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31929128 |
caccgtttgcaaacgcaggcgcaagcgacgacgtttcgacgatgcggccattgttctccgatgacatcaactcgtttaatgatatccgcaagaacttctg |
31929029 |
T |
|
| Q |
101 |
gaagcatggtagaccaatcagttctgtcctctgattcactaccaacggtgtcattgttggtagcattgagagccttaacattgttgaagtatctgaataa |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
31929028 |
gaagcatggtagaccaatcagttttgtcctctgattcactaccaacggtgtcatcgttggtagcattgagagccttaacattgctgaagtatctgaataa |
31928929 |
T |
|
| Q |
201 |
tttaagagatcgaaagagcttcat |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
31928928 |
tttaagagatcgaaagagcttcat |
31928905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 31923121 - 31922998
Alignment:
| Q |
1 |
caccgtttgcaaacgcaggcgcaagcgacgacgtttcgacgatgcggccattgttctccgatgacatcaactcgtttaatgatatccgcaagaagttctg |
100 |
Q |
| |
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|||||||| || |||||||| ||||||||||||||| |||| |||||||| ||||| || || || ||||||||||| || || ||||| || || | |
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| T |
31923121 |
caccgtttacacacgcaggcacaagcgacgacgttttgacggtgcggccactgttcctcggcaacgtcgactcgtttaattatctctgcaaggagatccg |
31923022 |
T |
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| Q |
101 |
gaagcatggtagaccaatcagttc |
124 |
Q |
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| ||||| |||||||||||||||| |
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| T |
31923021 |
gtagcatcgtagaccaatcagttc |
31922998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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