View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1017_low_1 (Length: 500)
Name: NF1017_low_1
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1017_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 271 - 472
Target Start/End: Original strand, 785795 - 785996
Alignment:
| Q |
271 |
atttgaaatccagcaaaactaagatgatgattgaagatggagggatatttgtgttactggttttgaaatttagtgctacgtaccacaacctttgaaccac |
370 |
Q |
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| T |
785795 |
atttgaaatccagcaaaactaagatgatgattgaagatggagggatatttgtgttactggttttgaaatttagtgctacgtaccacaacctttgaaccac |
785894 |
T |
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| Q |
371 |
tctcttcctttactacatttttctactcaatgcctttgattttggtttctaatatatagacactattggtaaacctttgtaaccatgggatatgtttatg |
470 |
Q |
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| T |
785895 |
tctcttcctttactacatttttctactcaatgcctttgattttggtttctaatatatagacactattggtaaacctttgtaaccatgggatatgtttatg |
785994 |
T |
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| Q |
471 |
at |
472 |
Q |
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|| |
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| T |
785995 |
at |
785996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 206
Target Start/End: Original strand, 785534 - 785730
Alignment:
| Q |
10 |
tcataggtaaccactgttatttcaaaaggctaacaaataggtacaagaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaatt |
109 |
Q |
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| T |
785534 |
tcataggtaaccactgttatttcaaaaggctaacaaataggtacaagaaatctaattaagctgaaaaaaggaaagcaagttattattgaaactccaaatt |
785633 |
T |
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| Q |
110 |
atcattttttgcttggttatgagatagaaactttgttacctatatttaatgaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatccca |
206 |
Q |
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| T |
785634 |
atcattttttgcttggttatgagatagaaactttgttacctatatttaatcaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatccca |
785730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 407252 - 407190
Alignment:
| Q |
142 |
ttgttacctatatttaatgaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcc |
204 |
Q |
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| T |
407252 |
ttgttacctatatttaatcaaggaaatcacggtcgaaaacatggttgaagtgggagtgcatcc |
407190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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