View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1017_low_3 (Length: 385)
Name: NF1017_low_3
Description: NF1017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1017_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 42852509 - 42852146
Alignment:
| Q |
1 |
tataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataagggatgatgatgaactacctgcaatgg |
100 |
Q |
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| T |
42852509 |
tataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataagggatgatgatgaactacctgcaatgg |
42852410 |
T |
|
| Q |
101 |
aagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatagttttacttcacatgctttgtttatattttctatatcaatcaa |
200 |
Q |
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| T |
42852409 |
aagacaatacaaacaagatacaaccttttgagccgtatgttgatgcatatttagatggttttacttcacatgctttgtttatattctctatatcaatcaa |
42852310 |
T |
|
| Q |
201 |
acttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatatttttaatcannnnnnnatgtataggcctgaaatatttaaacat |
300 |
Q |
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| T |
42852309 |
acttggatgttatatggtagcatatagtggcatccacaagttatcaaattctcatatttttaatcatttttttatgtataggcctgaaatatttaaacat |
42852210 |
T |
|
| Q |
301 |
gattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatgatgatgatg |
364 |
Q |
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| T |
42852209 |
gattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatgatgatgatg |
42852146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 155 - 362
Target Start/End: Complemental strand, 42852630 - 42852424
Alignment:
| Q |
155 |
atagttttacttcacatgctttgtttatattttctatatcaatcaaacttggatgttatatggtagcatatagtggcatccacaagttatcaaattctca |
254 |
Q |
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| T |
42852630 |
atagtttttcttcccatactttgttcatattccctat--cattcaaacttggatgttgtatggtggcatataatggtatccacaacatatcaaattctca |
42852533 |
T |
|
| Q |
255 |
tattttt--aatcannnnnnnatgtataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtg |
352 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |||| ||| | || |||||||| ||||||||||| |||||| |||| ||| | |
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| T |
42852532 |
tatttttttaatcatgtttt-atgtataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataaggg |
42852434 |
T |
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| Q |
353 |
atgatgatga |
362 |
Q |
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|||||||||| |
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| T |
42852433 |
atgatgatga |
42852424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 42852233 - 42852092
Alignment:
| Q |
1 |
tataggcctgaaatatttaaacaggatttaaaagtaatagccaccgagcaacaagagactgagacggacataagggatgatgatga---actacctgcaa |
97 |
Q |
| |
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||||||||||||||||||||||| |||| ||| | || |||||||| ||||||||||| |||||| |||| ||| ||||||||||| ||||||| || |
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| T |
42852233 |
tataggcctgaaatatttaaacatgattcaaatgaaagagccaccgtgcaacaagagaatgagacagacacaagtgatgatgatgatggactacctccac |
42852134 |
T |
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| Q |
98 |
tggaagacaatacaaacaagatacaaccttttgagccgtatg |
139 |
Q |
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|||||| ||||||||||| ||||||||||||||||| ||||| |
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| T |
42852133 |
tggaagccaatacaaacaggatacaaccttttgagctgtatg |
42852092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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