View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10180_high_1 (Length: 300)
Name: NF10180_high_1
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 7 - 291
Target Start/End: Complemental strand, 17337826 - 17337540
Alignment:
| Q |
7 |
gtagttaagagtgtaataagggacgtaattataaacatctagagctaagctttttgtgacttgtaagagggccataatcaaaatgtagtaatgctaagga |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17337826 |
gtagttaagagtgtaataagggacgtaattataaaaatctagagctaagcttgttgtgacttgtaagagggccataatcaaaatgtagtaatgctaagga |
17337727 |
T |
|
| Q |
107 |
tgttattcttnnnnnnn--ttgtagtatgcaagagagacgggagttatgataattaacttaggtgagcgtaattattgaaatagtggacaaaatgatgtt |
204 |
Q |
| |
|
||||||| || |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17337726 |
tgttattgttaaaaaaaaattgtagtatgcaagggagacgggagttatgataataaacttaggtgagcgtaattattgaaatagtggacaaaatgatgtt |
17337627 |
T |
|
| Q |
205 |
agaaagtaatagggtaaaaggggtaatgtgtatatcaaatagatgaggaaactagtgaatgttaaaagtaatcatggtggtgatgtc |
291 |
Q |
| |
|
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17337626 |
agaaattaatagggtaaaaggggtaatgtctatatcaaatagatgaggaaactagtgaatgttaaaagtaatcatggtggtgatgtc |
17337540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 14208179 - 14208211
Alignment:
| Q |
61 |
tgtgacttgtaagagggccataatcaaaatgta |
93 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
14208179 |
tgtgacttgcaagagggccataatcaaaatgta |
14208211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University