View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10180_low_13 (Length: 229)
Name: NF10180_low_13
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_low_13 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 40284579 - 40284351
Alignment:
| Q |
1 |
gaatgaaagatacttgattaaattgattcaatgaatgaaaaatacaaagagttaaacttatatacaatagcgaagcaaatgtatttgctaacaaatccct |
100 |
Q |
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| T |
40284579 |
gaatgaaagatacttgattaaattgattcaatgaatgaaaaatacaaagggttaaacttatgtacaatagtgaagcaaatgtatttgctaacaaatccct |
40284480 |
T |
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| Q |
101 |
aactaattcagttaagaaactaacttcctaaccagaagtctaactaactcgtccgagtctcgaccgtgtaatagtatttaaaccaaaaacaatagacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
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| T |
40284479 |
aactaattcagttaagaaactaacttcctaaccagaagtctaactaactcgtccgagtctcaaccgtgtaatagtatttaaaccaaaagcaatagacatt |
40284380 |
T |
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| Q |
201 |
cttattgataacaatcatatggacaataa |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40284379 |
cttattgataacaatcatatggacaataa |
40284351 |
T |
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