View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10180_low_14 (Length: 229)
Name: NF10180_low_14
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_low_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 11378295 - 11378522
Alignment:
| Q |
1 |
cccattatttatctttaagttcaattttaatgcgcaaaagttttaacaaggtcaataaatcacacacaattcaccctatcagaagcatttgtttgtctta |
100 |
Q |
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| T |
11378295 |
cccattatttatctttaagttcaattttaatgcgcaaaagttttaacatggtcaataaatcacacacaattcacaccatcagaatcatgtgtttgtctta |
11378394 |
T |
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| Q |
101 |
agctatagtttagataaaataaaagttagacgttttaaagacgctatgaacattgtctttataacattttcttttaacacacattcttttattttgcgaa |
200 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
11378395 |
agctatggtttagataaaataaaagttagacgttttaaaaacgctatgaacattgtctttataacattttcttttaacacacattttttta-tttgcgaa |
11378493 |
T |
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| Q |
201 |
aatcatgtaggtcttacaagtttatgtga |
229 |
Q |
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| T |
11378494 |
aatcatgtaggtcttacaagtttatgtga |
11378522 |
T |
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