View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10180_low_15 (Length: 229)
Name: NF10180_low_15
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 229
Target Start/End: Original strand, 51406439 - 51406655
Alignment:
| Q |
7 |
gttttctcatgtgtgatttgaatgagagcttggccttgaacaaatacctctatctctatctcatcaatacagaaaacgaccaaaacttcaaagaacacca |
106 |
Q |
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| T |
51406439 |
gttttctgatgtgtgatttgaatgagagcttggccttgaacaaatacctct------atctcatcaatacagaaaacgaccaaaacttcaaagaacacca |
51406532 |
T |
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| Q |
107 |
ttgcaaagcataaatggaaagcacaaagcaactacaaccaaaagtattccaacttttgtattcgtattagtacaactctactgacaactgtattcgtatt |
206 |
Q |
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| T |
51406533 |
ttgcaaagcataaatggaaagcacaaagcaactacaaccaaaagtattccaacttttgtattcgtattagtacaactctgctgacaactgtattcgtatt |
51406632 |
T |
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| Q |
207 |
ctatctagagtttgagattttat |
229 |
Q |
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| T |
51406633 |
ctatttagagtttgagattttat |
51406655 |
T |
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