View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10180_low_16 (Length: 206)
Name: NF10180_low_16
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 43122494 - 43122670
Alignment:
| Q |
18 |
tcttattcacaaattcttcatcacaatccaaaatcccatgaatttctcaatttctgatcctaaaaacttaattccttctccatcgtcacaacctcacacc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43122494 |
tcttattcacaaattcttcatcacaatccaaaatcccatgaatttctcaatttctgatcctaaaaacttaattccttctccatcgtcacaacctcacacc |
43122593 |
T |
|
| Q |
118 |
ttcaattttcgttttttcatcagttttctcacttcaacaaaatccagtaattttctcccaaaagggtttctcttgat |
194 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43122594 |
ttcagttttcgtttgttcatcagttttctcacttcaacaaaatccagtaattttctcccaaaagggtttctcttgat |
43122670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 114 - 194
Target Start/End: Original strand, 27366892 - 27366974
Alignment:
| Q |
114 |
caccttcaattttcgttttttcatcagttttctcacttcaacaaaatccagtaattttct--cccaaaagggtttctcttgat |
194 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||||||||||| || |||| |||||||| ||||||||||||||||||||| |
|
|
| T |
27366892 |
caccttcattttccgttttttcatcaattttctcacttcaacgcaacccagcaattttctcccccaaaagggtttctcttgat |
27366974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 95
Target Start/End: Original strand, 27366819 - 27366889
Alignment:
| Q |
22 |
attcacaaattcttcatcacaatccaaaatcccatgaatttctcaatttctgatcctaaaaacttaattccttc |
95 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
27366819 |
attcacaaattcttca---caatccaaaatcccacgaatttcttgatttctgatccctaaaactcaattccttc |
27366889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University