View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10180_low_2 (Length: 424)
Name: NF10180_low_2
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 102 - 396
Target Start/End: Complemental strand, 39682842 - 39682587
Alignment:
| Q |
102 |
tttggatttggaaatctataatgtccagtcatttgatctgactgaaaaatcccttgaattccggaaagggacggcactgggacaagtcctcactctcctc |
201 |
Q |
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| T |
39682842 |
tttggatttggaaatctataatgtccagtcatttgatctgactgaaaaatcccttgaattccggaatgggacggcactgggacaagtcctcactctcctc |
39682743 |
T |
|
| Q |
202 |
ctccactaaccgcctgcagaccccaccatgcaaatgcaattaaatgattccgtatgtatcacgtactatacgaacatnnnnnnnnnnnnnnnnncacgcg |
301 |
Q |
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| T |
39682742 |
ctccactaaccgcctgcagaccccaccatgca----------aatgattccgtatgtatcacgtacgatacgaa--------------------cacgcg |
39682673 |
T |
|
| Q |
302 |
gcacacacatcacaaac-aaacattcattattctaaaataatatttaaatatcgtatacttgtttgttacaccatctctttttaaaagggaaagta |
396 |
Q |
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| T |
39682672 |
gcacacacatcacaaacaaaacattcattattctaaaataatatttaaatatcg----------tgttacaccatctctttttaaaagggaaagta |
39682587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 31766206 - 31766167
Alignment:
| Q |
31 |
ttttatccaaaattaattttacaaaatcaatttattcaaa |
70 |
Q |
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| T |
31766206 |
ttttatccaaaattaattttacaaaatcaattcattcaaa |
31766167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 25445067 - 25445100
Alignment:
| Q |
37 |
ccaaaattaattttacaaaatcaatttattcaaa |
70 |
Q |
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| T |
25445067 |
ccaaaattaattttacaaaatcaatttaatcaaa |
25445100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 38740333 - 38740294
Alignment:
| Q |
31 |
ttttatccaaaattaattttacaaaatcaatttattcaaa |
70 |
Q |
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| T |
38740333 |
ttttatccaaaatcaattttacaaaatcaattcattcaaa |
38740294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 63
Target Start/End: Complemental strand, 47981828 - 47981795
Alignment:
| Q |
30 |
attttatccaaaattaattttacaaaatcaattt |
63 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
47981828 |
attttaaccaaaattaattttacaaaatcaattt |
47981795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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