View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10180_low_5 (Length: 315)
Name: NF10180_low_5
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_low_5 |
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| [»] scaffold0643 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 30013670 - 30013970
Alignment:
| Q |
10 |
ctaacacatgtcggtcaccgggcatgccttcaattcaaaggcaacaatatcattgtaaaattgggatttaaattagctttgtaagaagtagaaacaaaag |
109 |
Q |
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| T |
30013670 |
ctaacacatgtcggtcaccgggcatgccttcaattcaaaggcaacaataacattgtaaaattgggatttcaattagctttgtaagaagtagaaataaaag |
30013769 |
T |
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| Q |
110 |
ttatttgtgaaaaatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaatattacttatgaaatatagaaagtttgcttctagtttaga |
209 |
Q |
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| T |
30013770 |
ttatttgtgaaaaatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaacagtacttatgaaatacggaaagtttgcttctagtttaga |
30013869 |
T |
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| Q |
210 |
gcaaaaacatgaaaaaacagctcaaaacaacttttcaaatgccttagttactaatgagaatcttaagcaacaaattatgtcctcactagatgcaactatc |
309 |
Q |
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| T |
30013870 |
gcaaaaacatgaaaaaacagctcaaaacaacttttcacatgccttagttactgatgagaatcttaagcaacaaattatgtcctcactagatgcagctatc |
30013969 |
T |
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| Q |
310 |
t |
310 |
Q |
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| T |
30013970 |
t |
30013970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 102 - 308
Target Start/End: Original strand, 30073347 - 30073552
Alignment:
| Q |
102 |
aacaaaagttatttgtgaaaaatattgttgtgttctcaaaaatcagaacattgaaacctgcaatgaaatattacttatgaaatatagaaagtttgcttct |
201 |
Q |
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| T |
30073347 |
aacaaaatttatttgtgaaaaatattgatgtgttctcaaaaatcagaacattgaaacctgcaatgaaatagtacttatgaaatacagaaagtttgcttct |
30073446 |
T |
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| Q |
202 |
agtttagagcaaaaacatgaaaaaacagctcaaaacaacttttcaaatgccttagttactaatgagaatcttaagcaacaaattatgtcctcactagatg |
301 |
Q |
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| T |
30073447 |
agtttagagcaaaaacatg-aaaaacagctcaaaacaacttttcacatgccttagttactgatgagaatcttaagcaacaaattatatcctcactagatg |
30073545 |
T |
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| Q |
302 |
caactat |
308 |
Q |
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| T |
30073546 |
cagctat |
30073552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 10 - 73
Target Start/End: Original strand, 30073283 - 30073346
Alignment:
| Q |
10 |
ctaacacatgtcggtcaccgggcatgccttcaattcaaaggcaacaatatcattgtaaaattgg |
73 |
Q |
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| T |
30073283 |
ctaaaacatgacggtcaccgcgaatgccttcaattcaaaggcaacaataacattgtaaaattgg |
30073346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0643 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0643
Description:
Target: scaffold0643; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 310
Target Start/End: Complemental strand, 8354 - 8302
Alignment:
| Q |
258 |
tactaatgagaatcttaagcaacaaattatgtcctcactagatgcaactatct |
310 |
Q |
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| T |
8354 |
tactactgagaatcttaagcaacaaattatgtcctcactagaagcaactatct |
8302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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