View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10180_low_9 (Length: 269)
Name: NF10180_low_9
Description: NF10180
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10180_low_9 |
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| [»] scaffold0127 (1 HSPs) |
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| [»] scaffold0087 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4389176 - 4388956
Alignment:
| Q |
1 |
tgctacacactcttccttcattgaccattttcttacttttatacatctactatcaagagatatagtaaggctttgcattgcatgctcataatgtgtatta |
100 |
Q |
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| T |
4389176 |
tgctacacactcttccttcattgaccattttcttacttttatacatctactatcaagagatatagtaaggctttgcattgcatgctcataatgtgtatta |
4389077 |
T |
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| Q |
101 |
tgagagaagaaatgaatcaagtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaa |
200 |
Q |
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| T |
4389076 |
tgagagaagaaatgaatcaagtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaa |
4388977 |
T |
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| Q |
201 |
tgattgtagactatagaaacc |
221 |
Q |
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| T |
4388976 |
tgattgtagactatagaaacc |
4388956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 217 - 262
Target Start/End: Complemental strand, 4388936 - 4388891
Alignment:
| Q |
217 |
aaaccgtccaacaagttatctgtgtaactaatcttcattcttctct |
262 |
Q |
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| T |
4388936 |
aaactgtccaacaagttatctgtgtaactaatcttcattcttctct |
4388891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 203
Target Start/End: Original strand, 13933 - 14027
Alignment:
| Q |
109 |
gaaatgaatcaagtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggtttatagtaactgtattacaatga |
203 |
Q |
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| T |
13933 |
gaaatgaacgaagtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggtgtatgatagctatattacaatga |
14027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0087
Description:
Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 2896 - 2837
Alignment:
| Q |
121 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
180 |
Q |
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| T |
2896 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
2837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 7645 - 7586
Alignment:
| Q |
121 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
180 |
Q |
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| T |
7645 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
7586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0087; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 17785 - 17726
Alignment:
| Q |
121 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
180 |
Q |
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| T |
17785 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
17726 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 180
Target Start/End: Complemental strand, 5842743 - 5842684
Alignment:
| Q |
121 |
gtaaattctcattaattgatgaaagtgtagcattacaactaatatagagcttatgaaggt |
180 |
Q |
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| T |
5842743 |
gtaaattctcattcgttgatcaaagtgtagcgttacaacttatatagaggttatgaaggt |
5842684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 9606639 - 9606683
Alignment:
| Q |
96 |
tattatgagagaagaaatgaatcaagtaaattctcattaattgat |
140 |
Q |
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| T |
9606639 |
tattatgaaagaagaaatgaatgaagtaaattatcattaattgat |
9606683 |
T |
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