View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10181_high_2 (Length: 387)
Name: NF10181_high_2
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10181_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 42393691 - 42393313
Alignment:
| Q |
1 |
cgttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaa |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393691 |
cgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaa |
42393592 |
T |
|
| Q |
101 |
gagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtg |
200 |
Q |
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| T |
42393591 |
gagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtg |
42393492 |
T |
|
| Q |
201 |
aaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42393491 |
aaaccaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgct |
42393392 |
T |
|
| Q |
301 |
agaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccctttgcttct |
379 |
Q |
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| T |
42393391 |
agaatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgacttcaattatttcccctttggttct |
42393313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 3 - 374
Target Start/End: Complemental strand, 42377137 - 42376766
Alignment:
| Q |
3 |
ttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaaga |
102 |
Q |
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||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| || ||| | |||||||| |||||||||||||||||||| |
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| T |
42377137 |
ttgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttcaagaggagttagaaactgtggttggaaaagataacttagtagaaga |
42377038 |
T |
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| Q |
103 |
gtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaa |
202 |
Q |
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||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||||| ||||| ||||||||||| || | ||||| |||||||||||| |
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| T |
42377037 |
gtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgtttacaccctgcacttccacttttagtccctcactgcccaagtgaa |
42376938 |
T |
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| Q |
203 |
accaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttgggctattcatagagacccttccatttgggagaaaccgctag |
302 |
Q |
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||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||||||||||||||||||||||||||| |||||||||| || |||| |
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| T |
42376937 |
accaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacgtttgggctattcatagagacccttatgtttgggagaacccactag |
42376838 |
T |
|
| Q |
303 |
aatttgatccgacaaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccctttg |
374 |
Q |
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| T |
42376837 |
aatttgatcctacaaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttg |
42376766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 261
Target Start/End: Complemental strand, 42387485 - 42387228
Alignment:
| Q |
3 |
ttgagtttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaaga |
102 |
Q |
| |
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||||||||| ||| ||| |||||||| |||| |||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
42387485 |
ttgagtttgtaatagcataaatgatggacaa-ccagaagtaatgaggaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaaga |
42387387 |
T |
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| Q |
103 |
gtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaa |
202 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || | ||||| |||||||||||| |
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| T |
42387386 |
gtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaa |
42387287 |
T |
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| Q |
203 |
accaccaacgtaggaggctacacaattccaaaggggtcttgtgtgtttgtgaacgtttg |
261 |
Q |
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||||||||| | |||||||||||||||||| |||| ||| |||| ||| | |||||||| |
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| T |
42387286 |
accaccaacattggaggctacacaattccagagggatctcgtgtctttatcaacgtttg |
42387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 374
Target Start/End: Complemental strand, 42387220 - 42387162
Alignment:
| Q |
316 |
aaggttcttggatggtaaatgggattataaagggaatgactttaattatttcccctttg |
374 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| || |||||||| |||| |
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| T |
42387220 |
aaggttcttggatggtaaatgggattatagtgggaatgacttcaactatttcccttttg |
42387162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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