View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10181_high_5 (Length: 289)

Name: NF10181_high_5
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10181_high_5
NF10181_high_5
[»] chr7 (5 HSPs)
chr7 (17-284)||(12537973-12538240)
chr7 (17-284)||(15834485-15834752)
chr7 (18-284)||(11527695-11527961)
chr7 (27-284)||(23532017-23532274)
chr7 (87-284)||(15931849-15932046)
[»] chr8 (3 HSPs)
chr8 (17-284)||(25502946-25503213)
chr8 (17-284)||(21408730-21408998)
chr8 (17-284)||(21803222-21803490)
[»] chr1 (1 HSPs)
chr1 (17-284)||(554915-555182)
[»] chr6 (1 HSPs)
chr6 (17-284)||(11695108-11695375)
[»] chr2 (1 HSPs)
chr2 (17-284)||(29603282-29603543)
[»] scaffold0443 (1 HSPs)
scaffold0443 (17-263)||(6116-6358)
[»] scaffold0074 (1 HSPs)
scaffold0074 (17-284)||(56660-56927)
[»] chr3 (4 HSPs)
chr3 (18-284)||(14565764-14566030)
chr3 (17-265)||(16083059-16083307)
chr3 (87-284)||(102969-103166)
chr3 (27-265)||(15418115-15418353)
[»] scaffold0071 (1 HSPs)
scaffold0071 (27-265)||(43885-44123)
[»] scaffold0264 (1 HSPs)
scaffold0264 (18-157)||(12484-12623)


Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 12537973 - 12538240
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||    
T  12537973 ggacattcgagtgttgaagacggttacatgctcagaaggatcgcctcttccatcgaaagatggtagatgaggcggtttaaagttatcgggaaccggagcg 12538072  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||    
T  12538073 ttccatatttcagttgaaaacggttgaggctctggctcatccaaatcgccatgatgagagtcggccctttcttgctgttgcacttgttggatagtttcga 12538172  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||||||||||||||| |||||||| ||||||||||||| ||| |||||||||||||| | |||||||    
T  12538173 ctgaggcgagaagtgcctcattctgctccaacaattgggtgatttgactcctcattgtttgtgcttct 12538240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 15834485 - 15834752
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| ||||||||| ||||| |||||||| ||||||||||| |||    
T  15834485 ggacatccgagtgttgaagacggttacatgctcagaaggatcgcctcttccatcgaaagatggtagatgaggcggtttaaagttgtcgggaaccggtgcg 15834584  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| ||||| |||||||| ||||||||||| ||||||||||||||||||||||| || | | |||||||||| ||||||||||||||||||||||    
T  15834585 ttccatatttcagttgaaaacggttgaggctctggctcatccaaatcgccatgatgagagtcggtcttttcttgctgttgcacttgttggatagtttcga 15834684  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  15834685 ctgaggcgagaagtgcctcattctgctccaacaattgggcgatttgactcctcattgtctgtgcttct 15834752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 11527961 - 11527695
Alignment:
Q  18 gacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgt 117  Q
    |||||||  |||||||| || || ||||| ||||| ||||| || || |  |||||||||||||  || ||||| || |||||||| ||||| |||||||    
T  11527961 gacatcctggtgttgaaaacagttacatgttcagatggatcacctctcctgtcgaaagttggtaagtgcggcggtttgaagttatctggaacaggagcgt 11527862  T
Q  118 tccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgac 217  Q
    ||||||| ||||| || |||||||| || |||||||||||||  ||||| |||||||| || ||| | ||||| ||||||  ||| ||||| ||||| ||    
T  11527861 tccatatttcagttgagaacggctggggttctggttcatccatctcgccgtgatgagagtccgccttctcttgttgctgctgttgctggatggtttccac 11527762  T
Q  218 tgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    ||| ||||| || ||||| |||| ||||||||| ||||||||||||||| |||| || |||||||||    
T  11527761 tgaagcgagtagggcttcgttcttttccaacaactgggcgatctgactcttcatcgtttctgcttct 11527695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 23532017 - 23532274
Alignment:
Q  27 gtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgt 126  Q
    |||||||| ||||| ||||||||||| | ||| ||||| || |||||||||||||  || ||| | || |||||||| |||||||||||||||||||| |    
T  23532017 gtgttgaaaacggttacatgctcagatgcatcacccctcccgtcgaaagttggtaagtgcggcagtttgaagttatctggaaccggagcgttccatattt 23532116  T
Q  127 cagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgag 226  Q
     ||| || |||||||| || |||||||||||||  ||||| |||||||| || ||| | ||||| ||||||  ||| ||||| ||||| || || |||||    
T  23532117 tagttgagaacggctggggttctggttcatccagctcgccgtgatgagagtccgccttctcttgttgctgctgttgctggatggtttccaccgaagcgag 23532216  T
Q  227 aagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
     || ||||  |||||||||| ||| ||||||||||||||| |||| || |||||||||    
T  23532217 tagggctttgttctgttccatcaactgggcgatctgactcttcatcgtttctgcttct 23532274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 284
Target Start/End: Original strand, 15931849 - 15932046
Alignment:
Q  87 ggcggcttaaagttatcgggaaccggagcgttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagcccttt 186  Q
    ||||| || |||||||| ||||||||||||||||| || ||||  || ||||| || || ||||| ||||||| |||||| |||||||| || ||| | |    
T  15931849 ggcggtttgaagttatctggaaccggagcgttccagatttcagatgagaacggttggggttctggctcatccagatcgccgtgatgagagtccgccttct 15931948  T
Q  187 cttgctgctgcacttgttggatagtttcgactgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    | ||  ||||   ||| ||||| ||||| || |||||||| || ||||| |||||||||||||| ||||||||||||||| |||  || |||||||||    
T  15931949 cctgtagctgttgttgctggatggtttccaccgaggcgagtagagcttcgttctgttccaacaactgggcgatctgactcttcaccgtttctgcttct 15932046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 25503213 - 25502946
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    |||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||| |||||| || ||||| ||||||||||||||||||||||||    
T  25503213 ggacattcgagtgttgaagacggttacatgctcagaaggatcgcctcttccatcgaaagatggtaggtgaggcggtttaaagttatcgggaaccggagcg 25503114  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| ||| | |||||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||||    
T  25503113 ttccatatttcaattgaaaacggttgaggctctggctcatccaaatcgccgtgatgagagtcggccctttcttgctgttgcacttgttggatagtttcga 25503014  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||| | |||||||    
T  25503013 ctgaggcgagaagtgcctcattctgctccaacaattgggcgatttgactcctcattgtttgtgcttct 25502946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 21408998 - 21408730
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagtt-ggtagatggggcggcttaaagttatcgggaaccggagc 115  Q
    ||||||||  |||||||||||||| ||||||||||| ||||| |||||| | | ||||||| ||||  || |||||||| |||||||| |||||||||||    
T  21408998 ggacatcctggtgttgaagacggttacatgctcagaaggatcacccctttcgttgaaagtttggtaagtgcggcggcttgaagttatccggaaccggagc 21408899  T
Q  116 gttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcg 215  Q
    |||| |||| || || || ||||||||||| || ||||||||||  ||||| |||||||| |  ||| | ||||| |||||||  || |||||||||||     
T  21408898 gttctatatttcggttgagaacggctgaggttcgggttcatccagctcgccgtgatgagagttcgccttctcttgttgctgcagctgctggatagtttcc 21408799  T
Q  216 actgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    || || ||||| || ||||| |||||||||||||| ||||||||||||||| |||| || | |||||||    
T  21408798 accgaagcgagtagggcttcgttctgttccaacaactgggcgatctgactcttcatcgtttgtgcttct 21408730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 21803490 - 21803222
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagtt-ggtagatggggcggcttaaagttatcgggaaccggagc 115  Q
    ||||||||  |||||||||||||| ||||||||||| ||||| |||||| | | ||||||| ||||  || |||||||| |||||||| |||||||||||    
T  21803490 ggacatcctggtgttgaagacggttacatgctcagaaggatcacccctttcgttgaaagtttggtaagtgcggcggcttgaagttatccggaaccggagc 21803391  T
Q  116 gttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcg 215  Q
    |||| |||| || || || ||||||||||| || ||||||||||  ||||| |||||||| |  ||| | ||||| |||||||  || |||||||||||     
T  21803390 gttctatatttcggttgagaacggctgaggttcgggttcatccagctcgccgtgatgagagttcgccttctcttgttgctgcagctgctggatagtttcc 21803291  T
Q  216 actgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    || || ||||| || ||||| |||||||||||||| ||||||||||||||| |||| || | |||||||    
T  21803290 accgaagcgagtagggcttcgttctgttccaacaactgggcgatctgactcttcatcgtttgtgcttct 21803222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 554915 - 555182
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    |||||| ||||||||||||||||| |||||||| || || ||||  |||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  554915 ggacattcgagtgttgaagacggttacatgctctgaagggtcgcttcttccatcgaaagttggtagttggggcggtttaaagttatcgggaaccggagcg 555014  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| || || |||||||| ||||| ||||| ||||||||||||||||||||||| || | | |||||||||| ||||| ||||||||||||||||    
T  555015 ttccatatttcggttgaaaacggttgaggttctggctcatccaaatcgccatgatgagagtcggtcttttcttgctgttgcacctgttggatagtttcga 555114  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||||||| |||||||    
T  555115 ctgaggcgagaagtgcctcattctgctccaacagttgggcgatttgactcctcattgtctatgcttct 555182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 11695375 - 11695108
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||| |||| |||||||| ||||||||||||    
T  11695375 ggacatccgagtgttgaagacggtcacatgctcagacggaccgcccctcccatcgaaagttggtaaatggggcagcttgaagttatcaggaaccggagcg 11695276  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    ||||| || || ||||| ||||| |||||||||||||||| ||||||||| |||||||| || |  |||||||||| ||||||||| ||||||||||| |    
T  11695275 ttccaaatttcggtcgagaacggttgaggctctggttcattcaaatcgccgtgatgagagtccgttctttcttgctactgcacttgctggatagtttcta 11695176  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||||||||||||||| ||||||||||||| ||||||||| || |||||| |||| || | |||||||    
T  11695175 ctgaggcgagaagtgcctcattctgttccagcaattgggctatttgactcttcatcgtttgtgcttct 11695108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 284
Target Start/End: Original strand, 29603282 - 29603543
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    ||||||||  |||||||||||||| ||||||||||| |||||||||||||||| |||||||||||  || |||||||| |||||||| ||||||||||||    
T  29603282 ggacatcctggtgttgaagacggttacatgctcagaaggatcgccccttccattgaaagttggtaagtgcggcggcttgaagttatctggaaccggagcg 29603381  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| ||||| ||||||||||| ||||||||||||||||  ||||| |||||||| || ||| | || |||||||||      |||||||| || |    
T  29603382 ttccatatttcagttgaaaacggctggggctctggttcatccagctcgccgtgatgagagtccgccttctcctgctgctgc------tggatagtctcca 29603475  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||| ||||| || ||||| |||||||||||||| |||||||||||||||||||| || | |||||||    
T  29603476 ctgaagcgagtagagcttcgttctgttccaacaactgggcgatctgactcctcatcgtttgtgcttct 29603543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 263
Target Start/End: Original strand, 6116 - 6358
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |  || ||||| || |||||||| || || ||||||    
T  6116 ggacatccgagtgttgaagacggttacatgctcagaaggatcgccccttccatcgaaagttggcaagtgcggcggtttgaagttatccgggactggagcg 6215  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| || ||  ||||| | || ||||||||||||||||| ||||| ||||||||||| ||| ||||||||||||| | ||| |||||||| || |    
T  6216 ttccatatttcggtttaaaacagttggggctctggttcatccaactcgccgtgatgagaatccgccttttcttgctgctgtagttgctggatagtctcca 6315  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctga 263  Q
    | || |||||||    ||| |||||||||||||| ||||||||||||    
T  6316 ccgaagcgagaa----ttcgttctgttccaacaactgggcgatctga 6358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 56927 - 56660
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    ||||||||  |||||||||||||| ||||||||||| | |||||||||||||| ||| |||||||  || ||| |||| ||||||||  |||||||||||    
T  56927 ggacatcctggtgttgaagacggttacatgctcagacgaatcgccccttccattgaaggttggtaagtgcggcagcttgaagttatcttgaaccggagcg 56828  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| || || || ||||| || ||||||||||| ||||  |||||||||||||| || ||| | || |||||||||  ||| |||||||| || |    
T  56827 ttccatatttcggttgagaacggttggggctctggttcctccagctcgccatgatgagagtccgccttctcctgctgctgctattgctggatagtctcca 56728  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||| ||||| || ||||| |||||||||||||| |||||||||||||||||||| || | |||||||    
T  56727 ctgaagcgagtagagcttcgttctgttccaacaactgggcgatctgactcctcatcgtttgtgcttct 56660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 14565764 - 14566030
Alignment:
Q  18 gacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgt 117  Q
    ||||||| ||||||||| ||||| ||||| ||||| ||||| || || || |||||||| || |  || ||||||||||||||||| ||||| |||||||    
T  14565764 gacatcctagtgttgaaaacggttacatgttcagatggatctcctctcccgtcgaaagtgggcaagtgtggcggcttaaagttatccggaacgggagcgt 14565863  T
Q  118 tccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgac 217  Q
    ||||||| ||||| || |||||||| || |||||| ||||||  ||||| |||||| | || ||| ||||||| ||||||  ||| || || ||||| ||    
T  14565864 tccatatctcagttgagaacggctggggttctggtacatccatctcgccgtgatgacagtccgccttttcttgttgctgctgttgctgaatggtttccac 14565963  T
Q  218 tgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    ||| ||||| || ||||| ||||| ||||| |||||||||||||||||| |||| || || ||||||    
T  14565964 tgaagcgagtagggcttcgttctgctccaataattgggcgatctgactcttcatcgtttcagcttct 14566030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 16083307 - 16083059
Alignment:
Q  17 ggacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcg 116  Q
    ||||||||| |||||||| || |||||||| ||||| |||||||||||||||| ||| || || || || ||||| || ||||| || ||||| ||||||    
T  16083307 ggacatccgggtgttgaatactgtcacatgttcagacggatcgccccttccattgaaggtaggcaggtgcggcggtttgaagttctccggaactggagcg 16083208  T
Q  117 ttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcga 216  Q
    |||||||| ||||  || |||||||| || || |||||||| |  |||||||||||||| || | ||| || |||  ||||   |||||||| ||||| |    
T  16083207 ttccatatttcagctgagaacggctggggttccggttcatcaagctcgccatgatgagagtccgtcctctcctgcatctgctgctgttggatggtttcaa 16083108  T
Q  217 ctgaggcgagaagtgcttcattctgttccaacaattgggcgatctgact 265  Q
    | |||||||| |  |||||||||||||||||||  ||||||||||||||    
T  16083107 ccgaggcgagtaaagcttcattctgttccaacagctgggcgatctgact 16083059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 87 - 284
Target Start/End: Original strand, 102969 - 103166
Alignment:
Q  87 ggcggcttaaagttatcgggaaccggagcgttccatatgtcagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagcccttt 186  Q
    ||||| || |||||||| |||||  ||||||||||||| ||||| || |||||||| || || ||||||||||  ||||| |||||||| || ||| | |    
T  102969 ggcggtttgaagttatccggaacaagagcgttccatatttcagttgagaacggctggggttccggttcatccatctcgccgtgatgagagtctgccttct 103068  T
Q  187 cttgctgctgcacttgttggatagtttcgactgaggcgagaagtgcttcattctgttccaacaattgggcgatctgactcctcattgtctctgcttct 284  Q
    |||| ||||||  ||| || || ||||| ||||| ||||| || ||||| |||||||||| ||| ||||||||||||||| |||| || ||| |||||    
T  103069 cttgttgctgctgttgctgaatggtttccactgaagcgagcagggcttcgttctgttccagcaactgggcgatctgactcttcatcgtttctccttct 103166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 265
Target Start/End: Complemental strand, 15418353 - 15418115
Alignment:
Q  27 gtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgt 126  Q
    |||||||||||||||| ||| || || ||||| ||||| || || || || || |  || ||||| || |||||||| |||||||||||||||||||| |    
T  15418353 gtgttgaagacggtcatatgttccgatggatcacccctcccgtcaaaggtaggcaagtgaggcggtttgaagttatctggaaccggagcgttccatattt 15418254  T
Q  127 cagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgag 226  Q
    | |  || |||||||| || ||||| |||||||  ||||| ||  | || || ||  | || || |||||   ||| ||||| ||||| || || |||||    
T  15418253 cggctgagaacggctggggttctggctcatccagctcgccgtggcgggagtccgctttctcctgttgctgttgttgctggatggtttccaccgaagcgag 15418154  T
Q  227 aagtgcttcattctgttccaacaattgggcgatctgact 265  Q
     || ||||| |||||||||||||| ||||||||||||||    
T  15418153 tagagcttcgttctgttccaacaactgggcgatctgact 15418115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 265
Target Start/End: Original strand, 43885 - 44123
Alignment:
Q  27 gtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgttccatatgt 126  Q
    |||||||||||||||| ||| || || ||||| ||||| || || || || || |  || ||||| || |||||||| |||||||||||||||||||| |    
T  43885 gtgttgaagacggtcatatgttccgatggatcacccctcccgtcaaaggtaggcaagtgaggcggtttgaagttatctggaaccggagcgttccatattt 43984  T
Q  127 cagtcgaaaacggctgaggctctggttcatccaaatcgccatgatgagaatcagccctttcttgctgctgcacttgttggatagtttcgactgaggcgag 226  Q
    | |  || |||||||| || ||||| |||||||  ||||| ||  | || || ||  | || || |||||   ||| ||||| ||||| || || |||||    
T  43985 cggctgagaacggctggggttctggctcatccagctcgccgtggcgggagtccgctttctcctgttgctgttgttgctggatggtttccaccgaagcgag 44084  T
Q  227 aagtgcttcattctgttccaacaattgggcgatctgact 265  Q
     || ||||| |||||||||||||| ||||||||||||||    
T  44085 tagagcttcgttctgttccaacaactgggcgatctgact 44123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 12484 - 12623
Alignment:
Q  18 gacatccgagtgttgaagacggtcacatgctcagagggatcgccccttccatcgaaagttggtagatggggcggcttaaagttatcgggaaccggagcgt 117  Q
    ||||||| |||||||||||| ||||| |||||    ||||||||| | ||||||||||  | |||||| ||||||||||| || |  || |||||||| |    
T  12484 gacatcctagtgttgaagacagtcacgtgctccaccggatcgcccttcccatcgaaagaggttagatgaggcggcttaaaattttatgggaccggagcat 12583  T
Q  118 tccatatgtcagtcgaaaacggctgaggctctggttcatc 157  Q
    ||||||| || |  |  || ||||| ||||||||||||||    
T  12584 tccatatctcggcgggtaaaggctggggctctggttcatc 12623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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