View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10181_high_6 (Length: 254)

Name: NF10181_high_6
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10181_high_6
NF10181_high_6
[»] chr4 (3 HSPs)
chr4 (148-240)||(2984897-2984989)
chr4 (1-95)||(2984756-2984850)
chr4 (12-89)||(2984509-2984586)


Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 148 - 240
Target Start/End: Original strand, 2984897 - 2984989
Alignment:
Q  148 aagaacccaccaagatctataccagcacaatctcctcctacgccacctactcaaaagcaccaaacacttacgttagaccatgacggttaatat 240  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2984897 aagaacccaccaagatctataccagcacaatctcctcctacgccacctactcaaaagcaccaaacacttacgttagaccatgacggttaatat 2984989  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 2984756 - 2984850
Alignment:
Q  1 ttaagacttttcatgcttcacattttatgaaaaatgtaaggaatcaagcaaatttatctgataattagaataaagtacttaccagttcctgaatt 95  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2984756 ttaagacttttcatgcttcacattttatgaaaaatgtaaggaatcaagcaaatttatctgataatttgaataaagtacttaccagttcctgaatt 2984850  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 2984509 - 2984586
Alignment:
Q  12 catgcttcacattttatgaaaaatgtaaggaatcaagcaaatttatctgataattagaataaagtacttaccagttcc 89  Q
    |||||||||||||||||||||||  |||| | |||||||||||||| ||| | || ||||||| ||||||||||||||    
T  2984509 catgcttcacattttatgaaaaacctaagtagtcaagcaaatttatgtgagattttgaataaaatacttaccagttcc 2984586  T

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