View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10181_high_7 (Length: 240)
Name: NF10181_high_7
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10181_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 3392127 - 3391904
Alignment:
| Q |
1 |
gctcgatcacatgaaaggattatgaataacaaattacctttctaaatccctcttaccaacacaacttgattaaaaacacttaaatctcagcatgtaacat |
100 |
Q |
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| T |
3392127 |
gctcgatcacatgaaaggattatgaataacaaattacctttctaaatccctcttaccaacacaacttgattaaaaacacttaaatctcagcatgtaacat |
3392028 |
T |
|
| Q |
101 |
attcgactaacgaacactctcnnnnnnncctaagtgaaagtttccctcatgatttctcactaaatccctcaaccatgatttccctgaaccagttaatgaa |
200 |
Q |
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| T |
3392027 |
attccactaacgaacactctcataaaaacctaagtgaaagtttccctcatgatttctcactaaatccctcaaccatgatttccccgaaccagttaatgaa |
3391928 |
T |
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| Q |
201 |
ttaccatacacattcaagaataag |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
3391927 |
ttaccatacacattcaagaataag |
3391904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 7675963 - 7675904
Alignment:
| Q |
12 |
tgaaaggattatgaataacaaattacctttctaaatccctcttaccaacacaacttgatt |
71 |
Q |
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||||| || ||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
7675963 |
tgaaatgaatatgaataacaaattacctttctaaattgctcttaccagcacaacttgatt |
7675904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 137 - 183
Target Start/End: Complemental strand, 7675825 - 7675778
Alignment:
| Q |
137 |
aaagtttccctcatgatttctcactaaatccctc-aaccatgatttcc |
183 |
Q |
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| T |
7675825 |
aaagtttccctcatgatttctcactaaaccccccaaaccatgatttcc |
7675778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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