View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10181_low_11 (Length: 238)
Name: NF10181_low_11
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10181_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 25985556 - 25985779
Alignment:
| Q |
1 |
aaagataggtagtaggaatttccggttgttagaaaagagggtaagaggtcacatgctagccnnnnnnnnn-ccacatcattgtttttcaaccaaaattta |
99 |
Q |
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| T |
25985556 |
aaagataggtagtaggaatttccggttgttagaaaagagggtaagaggtcacatgctagcctcttttttttccacatcattgtttttcaaccaaaattta |
25985655 |
T |
|
| Q |
100 |
aacgagggattatcaaatgcaaaagggggtaaattaaaaatttagtcattgaaacttgagtatttaaaaatcaaacaattgtaaaatttgagaggctaaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25985656 |
aacgagggattatcaaatgcaaaagggggtaaattaaaaatttagtcattgaaacttgagtatttaaaaatcaaacaattgtaaaatttgagaggctaaa |
25985755 |
T |
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| Q |
200 |
atcaagcaattgaaacttgtgggt |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
25985756 |
atcaagcaattgaaacttgtgggt |
25985779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 186
Target Start/End: Original strand, 53327701 - 53327815
Alignment:
| Q |
71 |
ccacatcattgtttttcaaccaaaatttaaacgagggattatcaaatgcaaaagggggtaaattaaaaatttagtcattgaaacttgagtatttaaaaat |
170 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| | |||||| ||||||||| ||||||| |||||| ||| ||||| |
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| T |
53327701 |
ccacatcattgtttttcaaccaaaatgtaaacgagagattatcaaatacaaaaggcgataaatttaaaatttagccattgaagtttgagtgttt-aaaat |
53327799 |
T |
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| Q |
171 |
caaacaattgtaaaat |
186 |
Q |
| |
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|||||||||||||||| |
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| T |
53327800 |
caaacaattgtaaaat |
53327815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 53327613 - 53327661
Alignment:
| Q |
3 |
agataggtagtaggaatttccggttgttagaaaagagggtaagaggtca |
51 |
Q |
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||||||||| ||||||||||| ||||||||| ||||||||||| ||||| |
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| T |
53327613 |
agataggtaataggaatttccagttgttagagaagagggtaagtggtca |
53327661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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