View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10181_low_13 (Length: 217)
Name: NF10181_low_13
Description: NF10181
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10181_low_13 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 16)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 13129883 - 13129686
Alignment:
| Q |
12 |
gagatggacatctgagaggggagatattatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13129883 |
gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcgtagctttcaacacaggacccagaatttgtataggtaaagatcttagt |
13129784 |
T |
|
| Q |
112 |
gtcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaaggctttctgtgcttct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
13129783 |
ttcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgcttct |
13129686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 13161576 - 13161379
Alignment:
| Q |
12 |
gagatggacatctgagaggggagatattatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13161576 |
gagatggatatctgagaggggagatattatacatgtaccttcttacaagttcatatctttcaacacaggacccagaatttgtataggtaaagatcttagt |
13161477 |
T |
|
| Q |
112 |
gtcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaaggctttctgtgcttct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
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|
| T |
13161476 |
ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccttgtaaccccaaggctttctgtgtttct |
13161379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 12 - 209
Target Start/End: Complemental strand, 13094454 - 13094257
Alignment:
| Q |
12 |
gagatggacatctgagaggggagatattatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
13094454 |
gagatggatatctgagaggggagatattatacatgtaccatcttacaagttcatagctttcaacacaggacccagaatttgtataggtaaagatattagt |
13094355 |
T |
|
| Q |
112 |
gtcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaaggctttctgtgcttct |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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|
| T |
13094354 |
ttcattcaaatgaagatggtcgcagctgctttgttacggaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaggctttctgtgtttct |
13094257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 37 - 200
Target Start/End: Original strand, 13070338 - 13070501
Alignment:
| Q |
37 |
attatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatggtcgcag |
136 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||||||| ||||| || |||| |||| | ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13070338 |
attatacatgttccatcttacaagttcatagctttcaatacaggtccgagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcag |
13070437 |
T |
|
| Q |
137 |
ctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaaggctttc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
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|
| T |
13070438 |
ctgctttgttacagaagtttcacatacaggtggtggaaggtcaccctgtaaccccaaagctttc |
13070501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 13204489 - 13204333
Alignment:
| Q |
37 |
attatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatggtcgcag |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| ||||| || |||| |||| | ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
13204489 |
attatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtttgggtaaagatcttagtttcattcaaatgaagatggtcgcag |
13204390 |
T |
|
| Q |
137 |
ctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaa |
193 |
Q |
| |
|
|||||||||||||||| ||||||||| || | |||||||||||| |||||||||||| |
|
|
| T |
13204389 |
ctgctttgttacagaattttcacataaagatagtggaaggtcaccctgtaaccccaa |
13204333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 191
Target Start/End: Original strand, 30368245 - 30368424
Alignment:
| Q |
12 |
gagatggacatctgagaggggagatattatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagt |
111 |
Q |
| |
|
||||||| ||| ||||| ||| | |||||||||||||| ||||||||||||||| ||||||| |||||||| |||| |||||| ||||||||||||||| |
|
|
| T |
30368245 |
gagatgggtatcagagagaggacacattatacatgtaccatcttacaagttcatagctttcaatacaggacctagaagttgtatgggtaaagatcttagt |
30368344 |
T |
|
| Q |
112 |
gtcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaacccc |
191 |
Q |
| |
|
|| |||||||||||||||| |||||||| |||||| |||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
30368345 |
ttcgttcaaatgaagatggttgcagctgccttgttatggaagtttcacatacaggtcgtggaaggtcaccctgtaacccc |
30368424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 13101030 - 13100867
Alignment:
| Q |
37 |
attatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatggtcgcag |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| ||||||| |||| |||||| ||||| ||| |||| |||||||||||||||||||||||| |
|
|
| T |
13101030 |
attatacatgtaccatcttacaagttcatagctttcaat-caggacctagaagttgtatgggtaaggatattagcttcattcaaatgaagatggtcgcag |
13100932 |
T |
|
| Q |
137 |
ctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaaggctttct |
201 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| || ||||||| | ||||||| |
|
|
| T |
13100931 |
ctgctttgttaccgaagtttcacatacaggtggtggaaggtcaccctataaccccgaagctttct |
13100867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 201
Target Start/End: Complemental strand, 13007230 - 13007066
Alignment:
| Q |
37 |
attatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatggtcgcag |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| ||||| || |||| |||||| || || ||| |||| |||||||||||||||||||||||| |
|
|
| T |
13007230 |
attatacatgtaccatcttacaagttcatagctttcaatacaggtcctagaagttgtatgggcaaggatattagcttcattcaaatgaagatggtcgcag |
13007131 |
T |
|
| Q |
137 |
ctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaaggctttct |
201 |
Q |
| |
|
| |||||||||| |||||||||||| ||||||||| ||||||| || ||||||| | ||||||| |
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|
| T |
13007130 |
cagctttgttaccaaagtttcacataaaggtggtggcaggtcaccctataaccccgaagctttct |
13007066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 37 - 188
Target Start/End: Original strand, 13244683 - 13244834
Alignment:
| Q |
37 |
attatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatggtcgcag |
136 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| ||||||| |||| || |||| |||||| || ||||||||||| || |||||||||| ||||| |||| |
|
|
| T |
13244683 |
attataaatgtaccgtcttacaagttcatagctttcaatgcaggtcctagaagttgtattgggaaagatcttagcttcgttcaaatgaaaatggttgcag |
13244782 |
T |
|
| Q |
137 |
ctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaac |
188 |
Q |
| |
|
|| |||||||| |||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
13244783 |
cttctttgttatggaagtttcgcatacaggtggtggaaggtcaccctgtaac |
13244834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 13010739 - 13010647
Alignment:
| Q |
101 |
aagatcttagtgtcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaa |
193 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||||| ||||||| ||| |||| |||||| |||||||||||||| || ||||||||| |
|
|
| T |
13010739 |
aagatcttagtttcattctaatgaagatggtcgcagctgatttgttatggaaatttcgcatacaagtggtggaaggtcatgccataaccccaa |
13010647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 179
Target Start/End: Complemental strand, 13271616 - 13271474
Alignment:
| Q |
37 |
attatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatggtcgcag |
136 |
Q |
| |
|
|||||||||||||| ||||||||||||||| | ||||| |||| || |||| ||| | || |||||| |||| | ||||||||||| ||||| |||| |
|
|
| T |
13271616 |
attatacatgtaccatcttacaagttcatagcattcaatgcaggtcctagaagctgtcttgggaaagatattagctttattcaaatgaaaatggttgcag |
13271517 |
T |
|
| Q |
137 |
ctgctttgttacagaagtttcacatacaggtggtggaaggtca |
179 |
Q |
| |
|
|| || | ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
13271516 |
cttctgtattatggaagtttcacatacatgtggtggaaggtca |
13271474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 19279305 - 19279502
Alignment:
| Q |
12 |
gagatggacatctgagaggggagatattatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagt |
111 |
Q |
| |
|
|||||||| ||| || || ||| | |||||||||||||| || |||||||||||| | || || |||| || |||| ||| | || |||||| ||| | |
|
|
| T |
19279305 |
gagatggatatcggatagaggacaaattatacatgtaccatcgtacaagttcatagcgtttaatgcaggtccgagaagctgtctcggaaaagatattact |
19279404 |
T |
|
| Q |
112 |
gtcattcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaaggctttctgtgcttct |
209 |
Q |
| |
|
|| |||||||||| ||||| ||||||||| | ||| |||||||| ||||||||| |||||||||||| ||| || |||| | |||||||| |||| |
|
|
| T |
19279405 |
ttccttcaaatgaaaatggttgcagctgctgtattatggaagtttcgcatacaggtcgtggaaggtcacattgttactccaaaggtttctgtgattct |
19279502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 194
Target Start/End: Complemental strand, 13086058 - 13085980
Alignment:
| Q |
116 |
ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcacgctgtaaccccaag |
194 |
Q |
| |
|
|||||||||| ||||| ||||||||| ||||| ||||||||||||||| || ||||||||||| ||||||| ||||| |
|
|
| T |
13086058 |
ttcaaatgaaaatggttgcagctgctatgttatggaagtttcacatacaagttgtggaaggtcattctgtaactccaag |
13085980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 105
Target Start/End: Original strand, 13065375 - 13065443
Alignment:
| Q |
37 |
attatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagat |
105 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| |||| || |||| |||| | ||||||||| |
|
|
| T |
13065375 |
attatacatgtaccgtcttacaagttcatagctttcaatgcagggccaagaagttgtttgggtaaagat |
13065443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 12964031 - 12964180
Alignment:
| Q |
31 |
ggagatattatacatgtaccttcttacaagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatgg |
130 |
Q |
| |
|
||||| |||||||| || || ||||| ||||||||| | ||||| |||| || |||| |||||| || |||||| |||| | |||||||||| |||| |
|
|
| T |
12964031 |
ggagaaattatacaagtgccatcttataagttcatagcattcaatgcaggtcctagaagttgtattgggaaagatattagctttgttcaaatgaaaatgg |
12964130 |
T |
|
| Q |
131 |
tcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
180 |
Q |
| |
|
| || ||| | |||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
12964131 |
ttgctgctaatgtgttgtggaagtttcacatagaagtggtggaaggtcac |
12964180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 180
Target Start/End: Original strand, 13081106 - 13081170
Alignment:
| Q |
116 |
ttcaaatgaagatggtcgcagctgctttgttacagaagtttcacatacaggtggtggaaggtcac |
180 |
Q |
| |
|
|||||||||| ||||| |||||||| | ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
13081106 |
ttcaaatgaaaatggttgcagctgcagttttatttaagtttcacattcaggtggtggaaggtcac |
13081170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 31380253 - 31380325
Alignment:
| Q |
57 |
caagttcataactttcaacacaggacccagaatttgtataggtaaagatcttagtgtcattcaaatgaagatg |
129 |
Q |
| |
|
|||||||||| ||||||| ||||||||| ||| |||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
31380253 |
caagttcatatctttcaatacaggacccggaagttgtattggtaaagatcttagtttcattcaaattaagatg |
31380325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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